pachterlab / kallistoLinks
Near-optimal RNA-Seq quantification
☆706Updated 6 months ago
Alternatives and similar repositories for kallisto
Users that are interested in kallisto are comparing it to the libraries listed below
Sorting:
- MACS -- Model-based Analysis of ChIP-Seq☆758Updated last week
- Tools to process and analyze deep sequencing data.☆741Updated 3 months ago
- Differential expression of RNA-seq data using the Negative Binomial☆419Updated last week
- RSEM: accurate quantification of gene and isoform expression from RNA-Seq data☆454Updated last year
- Tools for handling Unique Molecular Identifiers in NGS data sets☆528Updated 3 months ago
- Differential analysis of RNA-Seq☆306Updated 5 months ago
- 🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment☆841Updated last year
- A wrapper around Cutadapt and FastQC to consistently apply adapter and quality trimming to FastQ files, with extra functionality for RRBS…☆527Updated last month
- 10x Genomics Single Cell Analysis☆434Updated 8 months ago
- Graph-based alignment (Hierarchical Graph FM index)☆514Updated last month
- ☆401Updated 3 years ago
- python module to plot beautiful and highly customizable genome browser tracks☆845Updated last year
- A tool to map bisulfite converted sequence reads and determine cytosine methylation states☆434Updated 2 months ago
- A quality control analysis tool for high throughput sequencing data☆546Updated last month
- Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing☆496Updated this week
- Collections of library structure and sequence of popular single cell genomic methods☆483Updated 5 months ago
- Bayesian haplotype-based genetic polymorphism discovery and genotyping.☆849Updated 5 months ago
- Trinity RNA-Seq de novo transcriptome assembly☆875Updated 8 months ago
- RNA-seq workflow using STAR and DESeq2☆346Updated last month
- Transcript assembly and quantification for RNA-Seq☆470Updated last week
- A tool to find sequencing data and metadata from public databases.☆591Updated last year
- Bioinformatics one liners from Ming Tang☆495Updated 5 years ago
- A fast and sensitive gapped read aligner☆747Updated last month
- ☆442Updated 5 years ago
- bedtools - the swiss army knife for genome arithmetic☆1,004Updated 7 months ago
- GTEx & TOPMed data production and analysis pipelines☆385Updated last month
- Customizable workflows based on snakemake and python for the analysis of NGS data☆397Updated last week
- GFF/GTF utility providing format conversions, region filtering, FASTA sequence extraction and more☆443Updated 10 months ago
- ENCODE ATAC-seq pipeline☆433Updated last year
- The Ensembl Variant Effect Predictor predicts the functional effects of genomic variants☆509Updated 2 weeks ago