seqfu - Sequece Fastx Utilities
☆126Mar 3, 2026Updated last month
Alternatives and similar repositories for seqfu2
Users that are interested in seqfu2 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ⛰ covtobed | Convert the coverage track from a BAM file into a BED file☆44Nov 6, 2025Updated 5 months ago
- Remove human reads from a sequencing run☆48Updated this week
- A wrapper to Heng Li's kseq/readfq, an efficient FastQ/Fasta parser☆15Jun 28, 2023Updated 2 years ago
- Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.☆246Oct 12, 2025Updated 5 months ago
- seqcover allows users to view coverage for hundreds of genes and dozens of samples☆51Apr 9, 2021Updated 5 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Assemble bacterial isolate genomes from Nanopore reads☆130Jan 22, 2025Updated last year
- overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites☆34Jun 6, 2025Updated 10 months ago
- Accurate metagenomic profiling && Fast large-scale sequence/genome searching☆208Sep 22, 2023Updated 2 years ago
- Deep learning-based structural variant filtering method☆39Nov 19, 2023Updated 2 years ago
- frame-shift correction for long-read (meta)genomics☆33Dec 11, 2023Updated 2 years ago
- Per-base per-nucleotide depth analysis☆149Mar 16, 2026Updated 3 weeks ago
- Randomly subsample sequencing reads or alignments☆258Apr 1, 2026Updated last week
- expressions on VCFs☆91Mar 17, 2026Updated 3 weeks ago
- Fasten toolkit, for streaming operations on fastq files☆81Oct 24, 2025Updated 5 months ago
- NordVPN Special Discount Offer • AdSave on top-rated NordVPN 1 or 2-year plans with secure browsing, privacy protection, and support for for all major platforms.
- ganon2 classifies genomic sequences against large sets of references efficiently, with integrated download and update of databases (refse…☆105Apr 3, 2026Updated last week
- A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)☆143Aug 24, 2025Updated 7 months ago
- A (very) fast program for getting statistics about a fastq file, the way I need them, written in Rust☆32Mar 20, 2026Updated 3 weeks ago
- Reorients assembled microbial sequences☆136Aug 21, 2025Updated 7 months ago
- Simulate mutations in genomes☆15Jun 15, 2020Updated 5 years ago
- nim wrapper for htslib for parsing genomics data files☆158Mar 31, 2026Updated last week
- Compute a pairwise SNP distance matrix from one or two alignment(s)☆26Sep 12, 2024Updated last year
- k-mers and the like☆22Updated this week
- Toolkit for calling structural variants using short or long reads☆115Mar 7, 2026Updated last month
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- Add biological annotations to variants in a given VCF file.☆32Updated this week
- Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!☆179Mar 17, 2026Updated 3 weeks ago
- Mapping NCBI Genbank accession to GTDB accession☆14Feb 13, 2021Updated 5 years ago
- A Python package for obtaining, parsing and exploring biological taxonomies (GTDB, NCBI, Silva, Greengenes, OTT)☆50Apr 1, 2026Updated last week
- Precise host read removal☆119Mar 28, 2026Updated last week
- Detects human contamination in bam files☆16Sep 10, 2020Updated 5 years ago
- Output FASTQ summary statistics in JSON format☆29Oct 30, 2022Updated 3 years ago
- Drug Resistance Prediction with Reference Graphs☆21Oct 23, 2025Updated 5 months ago
- MAGScoT - a MAG scoring and refinement tool☆43Oct 10, 2024Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- Bifrost graph gene caller.☆98Mar 29, 2026Updated last week
- ☆16Jun 18, 2020Updated 5 years ago
- 🧬 Efficient parallelized peta-scale protein database search☆40Jan 4, 2024Updated 2 years ago
- A versatile toolkit for k-mers with taxonomic information☆82Aug 28, 2025Updated 7 months ago
- ⚡️🧬 FastMLST: A multi-core tool for multilocus sequence typing of draft genome assemblies☆25Nov 19, 2025Updated 4 months ago
- Variant call verification☆16May 12, 2025Updated 10 months ago
- Read alignment statistics for metagenomics☆395Mar 16, 2026Updated 3 weeks ago