seqfu - Sequece Fastx Utilities
☆129Aug 10, 2026Updated this week
Alternatives and similar repositories for seqfu2
Users that are interested in seqfu2 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ⛰ covtobed | Convert the coverage track from a BAM file into a BED file☆44Nov 6, 2025Updated 9 months ago
- Remove human reads from a sequencing run☆52Jun 29, 2026Updated last month
- A wrapper to Heng Li's kseq/readfq, an efficient FastQ/Fasta parser☆15Jun 28, 2023Updated 3 years ago
- seqcover allows users to view coverage for hundreds of genes and dozens of samples☆51Apr 9, 2021Updated 5 years ago
- ☆36Updated this week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.☆260May 13, 2026Updated 3 months ago
- Assemble bacterial isolate genomes from Nanopore reads☆136Jan 22, 2025Updated last year
- Fasten toolkit, for streaming operations on fastq files☆82Oct 24, 2025Updated 9 months ago
- overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites☆34Jun 6, 2025Updated last year
- Accurate metagenomic profiling && Fast large-scale sequence/genome searching☆219Apr 24, 2026Updated 3 months ago
- Deep learning-based structural variant filtering method☆40Nov 19, 2023Updated 2 years ago
- frame-shift correction for long-read (meta)genomics☆33Dec 11, 2023Updated 2 years ago
- A (very) fast program for getting statistics about a fastq file, the way I need them, written in Rust☆33Jul 27, 2026Updated 2 weeks ago
- expressions on VCFs☆93Mar 17, 2026Updated 4 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Per-base per-nucleotide depth analysis☆151May 9, 2026Updated 3 months ago
- Randomly subsample sequencing reads or alignments☆271Updated this week
- A Python package for obtaining, parsing and exploring biological taxonomies (GTDB, NCBI, Silva, Greengenes, OTT)☆52May 5, 2026Updated 3 months ago
- Query sequence database by HMMs arranged in predefined synteny structure☆20Jun 23, 2026Updated last month
- ganon2 classifies genomic sequences against large sets of references efficiently, with integrated download and update of databases (refse…☆106Jul 20, 2026Updated 3 weeks ago
- A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)☆145Aug 24, 2025Updated 11 months ago
- Reorients assembled microbial sequences☆143Jun 30, 2026Updated last month
- Fast approximate string searching☆162Updated this week
- Simulate mutations in genomes☆15Jun 15, 2020Updated 6 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- nim wrapper for htslib for parsing genomics data files☆158May 2, 2026Updated 3 months ago
- Compute a pairwise SNP distance matrix from one or two alignment(s)☆26Sep 12, 2024Updated last year
- Precise host read removal☆129Apr 13, 2026Updated 4 months ago
- k-mers and the like☆23Updated this week
- Toolkit for calling structural variants using short or long reads☆115Jul 14, 2026Updated last month
- Mapping NCBI Genbank accession to GTDB accession☆14Feb 13, 2021Updated 5 years ago
- Add biological annotations to variants in a given VCF file.☆33Apr 4, 2026Updated 4 months ago
- Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!☆189Mar 17, 2026Updated 4 months ago
- Output FASTQ summary statistics in JSON format☆29Oct 30, 2022Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- MAGScoT - a MAG scoring and refinement tool☆48Apr 8, 2026Updated 4 months ago
- Detects human contamination in bam files☆16Sep 10, 2020Updated 5 years ago
- Drug Resistance Prediction with Reference Graphs☆21Oct 23, 2025Updated 9 months ago
- Bifrost graph gene caller.☆99Jun 18, 2026Updated last month
- 🧬 Efficient parallelized peta-scale protein database search☆39Jan 4, 2024Updated 2 years ago
- Targeted Detection and Reconstruction of Plasmids☆22May 7, 2024Updated 2 years ago
- ☆16Jun 18, 2020Updated 6 years ago