telatin / seqfu2

Related projects ⓘ

Alternatives and complementary repositories for seqfu2

• PacificBiosciences / barcoding
  Lima - Demultiplex Barcoded PacBio Samples
  ☆65Updated last week
• bcgsc / RNA-Bloom
  reference-free transcriptome assembly for short and long reads
  ☆96Updated 9 months ago
• gatech-genemark / ProtHint
  Protein hint generation pipeline for gene finding in eukaryotic genomes
  ☆56Updated last year
• nanoporetech / rerio
  Research release basecalling models and configurations
  ☆103Updated 4 months ago
• arangrhie / T2T-Polish
  Evaluation and polishing workflows for T2T genome assemblies
  ☆104Updated 3 weeks ago
• Dfam-consortium / TETools
  Dfam Transposable Element Tools Docker container.
  ☆84Updated last month
• PacificBiosciences / HiPhase
  Small variant, structural variant, and short tandem repeat phasing tool for PacBio HiFi reads
  ☆70Updated last month
• enasequence / enaBrowserTools
  A collection of scripts to assist in the retrieval of data from the ENA Browser
  ☆73Updated 7 months ago
• bhattlab / lathe
  A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing
  ☆69Updated 3 years ago
• marbl / meryl
  A genomic k-mer counter (and sequence utility) with nice features.
  ☆115Updated this week
• takaram / kofam_scan
  CLI tool to annotate genes with KOfam
  ☆72Updated last year
• rhysnewell / aviary
  A hybrid assembly and MAG recovery pipeline (and more!)
  ☆82Updated this week
• oschwengers / asap
  A scalable bacterial genome assembly, annotation and analysis pipeline
  ☆71Updated 11 months ago
• GenomiqueENS / toulligQC
  A post sequencing QC tool for Oxford Nanopore sequencers
  ☆89Updated 2 months ago
• lh3 / pangene
  Constructing a pangenome gene graph
  ☆174Updated 3 months ago
• kcleal / dysgu
  Toolkit for calling structural variants using short or long reads
  ☆95Updated 2 weeks ago
• bhattlab / kraken2_classification
  Snakemake workflow for metagenomic classification with Kraken2
  ☆66Updated last year
• WGLab / NanoCaller
  Variant calling tool for long-read sequencing data
  ☆100Updated 5 months ago
• nanoporetech / pinfish
  Tools to annotate genomes using long read transcriptomics data
  ☆45Updated 3 years ago
• EVidenceModeler / EVidenceModeler
  source code for EVM
  ☆103Updated 10 months ago
• nf-core / funcscan
  (Meta-)genome screening for functional and natural product gene sequences
  ☆74Updated last week
• DessimozLab / read2tree
  a tool for inferring species tree from sequencing reads
  ☆143Updated this week
• bcgsc / LongStitch
  Correct and scaffold assemblies using long reads
  ☆46Updated last year
• sheinasim / HiFiAdapterFilt
  Remove CCS reads with remnant PacBio adapter sequences and convert outputs to a compressed .fastq (.fastq.gz).
  ☆81Updated 3 months ago
• nanoporetech / pychopper
  A tool to identify, orient, trim and rescue full length cDNA reads
  ☆80Updated 2 years ago
• bluenote-1577 / skani
  Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.
  ☆169Updated 3 months ago
• nanoporetech / pipeline-nanopore-denovo-isoforms
  Pipeline for de novo clustering of long transcriptomic reads
  ☆26Updated 2 years ago
• wdecoster / cramino
  A *fast* tool for BAM/CRAM quality evaluation, intended for long reads
  ☆127Updated this week
• wdecoster / nanocomp
  Comparison of multiple long read datasets
  ☆103Updated this week
• TimD1 / vcfdist
  vcfdist: Accurately benchmarking phased variant calls
  ☆76Updated last week