rvalieris / parallel-fastq-dumpLinks
parallel fastq-dump wrapper
☆301Updated 2 years ago
Alternatives and similar repositories for parallel-fastq-dump
Users that are interested in parallel-fastq-dump are comparing it to the libraries listed below
Sorting:
- ☆283Updated last month
- Miscellaneous collection of Python and R scripts for processing Iso-Seq data☆278Updated 2 years ago
- This Snakemake pipeline implements the GATK best-practices workflow☆262Updated 2 years ago
- A package for including transposable elements in differential enrichment analysis of sequencing datasets.☆273Updated last month
- A collection of scripts and notes related to genomics and bioinformatics☆217Updated 2 weeks ago
- SUPPA: Fast quantification of splicing and differential splicing☆289Updated last month
- Application for making ENCODE Blacklists☆332Updated 4 years ago
- RNA-seq workflow using STAR and DESeq2☆350Updated this week
- Download FASTQ files from SRA or ENA repositories.☆353Updated 2 weeks ago
- Fast and accurate gene fusion detection from RNA-Seq data☆256Updated 3 months ago
- Full-Length Alternative Isoform analysis of RNA☆245Updated last week
- Package for fetching metadata and downloading data from SRA/ENA/GEO☆348Updated 2 weeks ago
- Tool for the Quality Control of Long-Read Defined Transcriptomes☆250Updated 2 weeks ago
- ATAC-seq peak-calling and QC analysis pipeline☆218Updated last month
- Quick mining and visualization of NGS data by integrating genomic databases☆268Updated 2 years ago
- Easier download/extract of FASTA/Q read data and metadata from the ENA, NCBI, AWS or GCP.☆283Updated 4 months ago
- HiC-Pro: An optimized and flexible pipeline for Hi-C data processing☆429Updated last year
- This repository contains chromosome/contig name mappings between UCSC <-> Ensembl <-> Gencode for a variety of genomes.☆245Updated 3 years ago
- HiCExplorer is a powerful and easy to use set of tools to process, normalize and visualize Hi-C data.☆260Updated 5 months ago
- A tool to map bisulfite converted sequence reads and determine cytosine methylation states☆439Updated 4 months ago
- Customizable workflows based on snakemake and python for the analysis of NGS data☆395Updated this week
- Python application to generate self-contained pages embedding IGV visualizations, with no dependency on original input files.☆395Updated last month
- Count bases in BAM/CRAM files☆322Updated 3 years ago
- Plot structural variant signals from many BAMs and CRAMs☆557Updated last year
- Discovering known and novel miRNAs from small RNA sequencing data☆157Updated last week
- Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads☆227Updated 5 months ago
- ChIP-seq peak-calling, QC and differential analysis pipeline.☆227Updated last month
- GFF/GTF utility providing format conversions, region filtering, FASTA sequence extraction and more☆447Updated 11 months ago
- Documentation for the ANNOVAR software☆245Updated 4 months ago
- Web application to explore the Sequence Read Archive.☆217Updated 5 months ago