rvalieris / parallel-fastq-dump
parallel fastq-dump wrapper
☆287Updated last year
Alternatives and similar repositories for parallel-fastq-dump:
Users that are interested in parallel-fastq-dump are comparing it to the libraries listed below
- RNA-seq workflow using STAR and DESeq2☆335Updated 6 months ago
- Quick mining and visualization of NGS data by integrating genomic databases☆263Updated last year
- Application for making ENCODE Blacklists☆288Updated 3 years ago
- ATAC-seq peak-calling and QC analysis pipeline☆197Updated last week
- ☆240Updated 3 months ago
- Download FASTQ files from SRA or ENA repositories.☆303Updated 4 months ago
- A package for including transposable elements in differential enrichment analysis of sequencing datasets.☆240Updated 2 weeks ago
- Fast and accurate gene fusion detection from RNA-Seq data☆232Updated 3 months ago
- A collection of scripts and notes related to genomics and bioinformatics☆204Updated last week
- ☆146Updated 2 years ago
- Web application to explore the Sequence Read Archive.☆210Updated last month
- Tool for the Quality Control of Long-Read Defined Transcriptomes☆206Updated this week
- This Snakemake pipeline implements the GATK best-practices workflow☆247Updated last year
- Miscellaneous collection of Python and R scripts for processing Iso-Seq data☆261Updated last year
- Customizable workflows based on snakemake and python for the analysis of NGS data☆393Updated this week
- A short tutorial on how to use RSEM☆136Updated 4 years ago
- HiCExplorer is a powerful and easy to use set of tools to process, normalize and visualize Hi-C data.☆239Updated 2 months ago
- Package for fetching metadata and downloading data from SRA/ENA/GEO☆321Updated this week
- HiC-Pro: An optimized and flexible pipeline for Hi-C data processing☆394Updated 10 months ago
- ChIP-seq peak-calling, QC and differential analysis pipeline.☆206Updated 3 weeks ago
- Transcription factor Occupancy prediction By Investigation of ATAC-seq Signal☆208Updated 3 weeks ago
- Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads☆202Updated 3 months ago
- SUPPA: Fast quantification of splicing and differential splicing☆269Updated 8 months ago
- TransDecoder source☆285Updated 4 months ago
- Full-Length Alternative Isoform analysis of RNA☆218Updated this week
- Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark or bwa-meth + MethylDackel☆157Updated 2 weeks ago
- Plot structural variant signals from many BAMs and CRAMs☆538Updated 7 months ago
- Intro to ChIPseq using HPC☆294Updated 2 years ago
- Discovering known and novel miRNAs from small RNA sequencing data☆142Updated 5 months ago
- This repository contains chromosome/contig name mappings between UCSC <-> Ensembl <-> Gencode for a variety of genomes.☆238Updated 2 years ago