𧬠gget enables efficient querying of genomic reference databases
β1,108Mar 19, 2026Updated last week
Alternatives and similar repositories for gget
Users that are interested in gget are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A tool to find sequencing data and metadata from public databases.β597Aug 13, 2024Updated last year
- Examples for gget (https://github.com/pachterlab/gget).β39Feb 20, 2026Updated last month
- genes and genomes at your fingertipsβ410Mar 5, 2026Updated 3 weeks ago
- Download FASTQ files from SRA or ENA repositories.β376Feb 1, 2026Updated last month
- Python library for array programming on biological datasets. Documentation available at: https://bionumpy.github.io/bionumpy/β290Jun 16, 2025Updated 9 months ago
- 1-Click AI Models by DigitalOcean Gradient β’ AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- Bioconvert is a collaborative project to facilitate the interconversion of life science data from one format to another.β390Mar 18, 2026Updated last week
- A Python implementation of the DESeq2 pipeline for bulk RNA-seq DEA.β742Updated this week
- Gene cluster comparison figure generatorβ637Dec 22, 2025Updated 3 months ago
- Python application to generate self-contained pages embedding IGV visualizations, with no dependency on original input files.β404Feb 3, 2026Updated last month
- A grammar of graphics for comparative genomicsβ750Feb 23, 2026Updated last month
- Align proteins to genomes with splicing and frameshiftβ396Jan 5, 2026Updated 2 months ago
- A list of interesting genome browser and genome visualization programsβ1,056Mar 17, 2026Updated last week
- python module to plot beautiful and highly customizable genome browser tracksβ868Jul 10, 2024Updated last year
- MMseqs2: ultra fast and sensitive search and clustering suiteβ2,005Mar 9, 2026Updated 2 weeks ago
- NordVPN Threat Protection Proβ’ β’ AdTake your cybersecurity to the next level. Block phishing, malware, trackers, and ads. Lightweight app that works with all browsers.
- Genome browser and variant annotationβ392Oct 30, 2025Updated 4 months ago
- fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencingβ831Feb 10, 2026Updated last month
- machine-readable file format for genomic library sequence and structureβ128Updated this week
- Tool for plotting sequencing data along genomic coordinates.β336Dec 12, 2025Updated 3 months ago
- An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)β2,308Updated this week
- A cross-platform and ultrafast toolkit for FASTA/Q file manipulationβ1,530Feb 27, 2026Updated 3 weeks ago
- An efficient CLI to extract sequences from the SRAβ123Mar 4, 2026Updated 3 weeks ago
- Genomic interval operations on Pandas DataFramesβ191Mar 2, 2026Updated 3 weeks ago
- Deep probabilistic analysis of single-cell and spatial omics dataβ1,585Updated this week
- Managed Database hosting by DigitalOcean β’ AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- A declarative interactive genomics visualization library for Python.β243Nov 24, 2025Updated 4 months ago
- A wrapper for the kallisto | bustools workflow for single-cell RNA-seq pre-processingβ186Mar 11, 2026Updated 2 weeks ago
- Tool to plot synteny and structural rearrangements between genomesβ343Apr 7, 2025Updated 11 months ago
- Aggregate results from bioinformatics analyses across many samples into a single report.β1,430Mar 12, 2026Updated 2 weeks ago
- A Rust library and command line tool for working with genomic ranges and their data.β100May 29, 2024Updated last year
- Gene Set Enrichment Analysis in Pythonβ695Mar 10, 2026Updated 2 weeks ago
- trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and fuβ¦β101Feb 24, 2026Updated last month
- Python library to plot DNA sequence features (e.g. from Genbank files)β683Jul 2, 2025Updated 8 months ago
- Command line scientific data management toolβ231Nov 4, 2024Updated last year
- Simple, predictable pricing with DigitalOcean hosting β’ AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Performant Pythonic GenomicRangesβ494Jan 27, 2026Updated last month
- Accurate metagenomic profiling && Fast large-scale sequence/genome searchingβ208Sep 22, 2023Updated 2 years ago
- A small database of weird gene annotationsβ206Mar 8, 2026Updated 2 weeks ago
- Toolkit for processing sequences in FASTA/Q formatsβ1,532Jun 1, 2025Updated 9 months ago
- long read RNA-seq quantificationβ106Mar 16, 2026Updated last week
- Biological sequence analysis for the modern age.β264Feb 22, 2026Updated last month
- A library of free open source icons for science illustrations in biology and chemistryβ1,625Updated this week