pachterlab / gget
🧬 gget enables efficient querying of genomic reference databases
☆1,001Updated this week
Alternatives and similar repositories for gget:
Users that are interested in gget are comparing it to the libraries listed below
- scRNAseq analysis notes from Ming Tang☆680Updated 3 months ago
- A list of interesting genome browser and genome visualization programs☆916Updated last week
- A tool to find sequencing data and metadata from public databases.☆567Updated 7 months ago
- python module to plot beautiful and highly customizable genome browser tracks☆797Updated 8 months ago
- Cutadapt removes adapter sequences from sequencing reads☆537Updated 3 weeks ago
- Introduction to Computational Biology and Bioinformatics Course at Caltech, 2023☆473Updated last year
- List of software packages for multi-omics analysis☆760Updated 10 months ago
- Sequential regulatory activity predictions with deep convolutional neural networks.☆427Updated 9 months ago
- Python library to handle Gene Ontology (GO) terms☆808Updated 4 months ago
- Automatically exported from code.google.com/p/cdhit☆656Updated 2 years ago
- Scripts to download genomes from the NCBI FTP servers☆987Updated 7 months ago
- Gene Set Enrichment Analysis in Python☆605Updated this week
- Python library for array programming on biological datasets. Documentation available at: https://bionumpy.github.io/bionumpy/☆280Updated this week
- genes and genomes at your fingertips☆386Updated 2 weeks ago
- Aggregate results from bioinformatics analyses across many samples into a single report.☆1,271Updated this week
- Phylogenetic orthology inference for comparative genomics☆742Updated 4 months ago
- Fast genome-wide functional annotation through orthology assignment☆596Updated 10 months ago
- Python library to plot DNA sequence features (e.g. from Genbank files)☆619Updated 2 months ago
- Gene cluster comparison figure generator☆555Updated 3 months ago
- RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.☆990Updated this week
- A list of useful bioinformatics resources☆599Updated last year
- Bioinformatics one liners from Ming Tang☆464Updated 4 years ago
- Analysis of deep sequencing data for rapid and intuitive interpretation of genome editing experiments☆296Updated this week
- The second version of the Kraken taxonomic sequence classification system☆764Updated this week
- gReLU is a python library to train, interpret, and apply deep learning models to DNA sequences.☆251Updated this week
- A comprehensive library for computational molecular biology☆751Updated this week
- Customizable workflows based on snakemake and python for the analysis of NGS data☆393Updated last week
- Hone computational biology skills by re-enacting Figure 1 of modern biology papers☆218Updated 7 months ago
- Efficient pythonic random access to fasta subsequences☆464Updated 4 months ago
- Genome-scale protein function classification☆315Updated 2 weeks ago