🧬 gget enables efficient querying of genomic reference databases
☆1,100Mar 1, 2026Updated this week
Alternatives and similar repositories for gget
Users that are interested in gget are comparing it to the libraries listed below
Sorting:
- A tool to find sequencing data and metadata from public databases.☆595Aug 13, 2024Updated last year
- genes and genomes at your fingertips☆408Sep 30, 2025Updated 5 months ago
- Bioconvert is a collaborative project to facilitate the interconversion of life science data from one format to another.☆388Jun 19, 2025Updated 8 months ago
- A Python implementation of the DESeq2 pipeline for bulk RNA-seq DEA.☆739Updated this week
- Align proteins to genomes with splicing and frameshift☆395Jan 5, 2026Updated 2 months ago
- Python library for array programming on biological datasets. Documentation available at: https://bionumpy.github.io/bionumpy/☆290Jun 16, 2025Updated 8 months ago
- Download FASTQ files from SRA or ENA repositories.☆369Feb 1, 2026Updated last month
- A list of interesting genome browser and genome visualization programs☆1,051Feb 25, 2026Updated last week
- Python application to generate self-contained pages embedding IGV visualizations, with no dependency on original input files.☆398Feb 3, 2026Updated last month
- A grammar of graphics for comparative genomics☆744Feb 23, 2026Updated last week
- Examples for gget (https://github.com/pachterlab/gget).☆39Feb 20, 2026Updated last week
- Gene cluster comparison figure generator☆636Dec 22, 2025Updated 2 months ago
- Genome browser and variant annotation☆391Oct 30, 2025Updated 4 months ago
- MMseqs2: ultra fast and sensitive search and clustering suite☆1,984Feb 21, 2026Updated last week
- python module to plot beautiful and highly customizable genome browser tracks☆864Jul 10, 2024Updated last year
- An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)☆2,297Jan 22, 2026Updated last month
- An efficient CLI to extract sequences from the SRA☆121Jan 30, 2026Updated last month
- Tool for plotting sequencing data along genomic coordinates.☆336Dec 12, 2025Updated 2 months ago
- Genomic interval operations on Pandas DataFrames☆190Feb 2, 2026Updated last month
- fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing☆826Feb 10, 2026Updated 3 weeks ago
- A cross-platform and ultrafast toolkit for FASTA/Q file manipulation☆1,520Feb 27, 2026Updated last week
- A declarative interactive genomics visualization library for Python.☆240Nov 24, 2025Updated 3 months ago
- Aggregate results from bioinformatics analyses across many samples into a single report.☆1,425Updated this week
- Deep probabilistic analysis of single-cell and spatial omics data☆1,573Updated this week
- Tool to plot synteny and structural rearrangements between genomes☆342Apr 7, 2025Updated 10 months ago
- machine-readable file format for genomic library sequence and structure☆128Feb 9, 2026Updated 3 weeks ago
- Performant Pythonic GenomicRanges☆494Jan 27, 2026Updated last month
- Gene Set Enrichment Analysis in Python☆692Dec 17, 2025Updated 2 months ago
- trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and fu…☆100Feb 24, 2026Updated last week
- Accurate metagenomic profiling && Fast large-scale sequence/genome searching☆207Sep 22, 2023Updated 2 years ago
- Python library to plot DNA sequence features (e.g. from Genbank files)☆683Jul 2, 2025Updated 8 months ago
- A small database of weird gene annotations☆205Feb 7, 2026Updated 3 weeks ago
- Scalable genetics toolkit☆274Sep 30, 2025Updated 5 months ago
- Bioinformatics I/O libraries in Rust☆655Updated this week
- Command line scientific data management tool☆231Nov 4, 2024Updated last year
- A wrapper for the kallisto | bustools workflow for single-cell RNA-seq pre-processing☆183Jan 22, 2026Updated last month
- A genome visualization python package for comparative genomics☆396Dec 6, 2025Updated 3 months ago
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆607Feb 18, 2026Updated 2 weeks ago
- Accelerated BLAST compatible local sequence aligner.☆1,249Updated this week