🧬 gget enables efficient querying of genomic reference databases
☆1,117Apr 9, 2026Updated this week
Alternatives and similar repositories for gget
Users that are interested in gget are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A tool to find sequencing data and metadata from public databases.☆598Aug 13, 2024Updated last year
- Examples for gget (https://github.com/pachterlab/gget).☆39Feb 20, 2026Updated last month
- genes and genomes at your fingertips☆410Mar 5, 2026Updated last month
- Download FASTQ files from SRA or ENA repositories.☆379Feb 1, 2026Updated 2 months ago
- Python library for array programming on biological datasets. Documentation available at: https://bionumpy.github.io/bionumpy/☆290Jun 16, 2025Updated 9 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Gene cluster comparison figure generator☆637Dec 22, 2025Updated 3 months ago
- Bioconvert is a collaborative project to facilitate the interconversion of life science data from one format to another.☆389Apr 4, 2026Updated last week
- Python application to generate self-contained pages embedding IGV visualizations, with no dependency on original input files.☆406Apr 1, 2026Updated 2 weeks ago
- A Python implementation of the DESeq2 pipeline for bulk RNA-seq DEA.☆747Updated this week
- A grammar of graphics for comparative genomics☆754Feb 23, 2026Updated last month
- Align proteins to genomes with splicing and frameshift☆398Jan 5, 2026Updated 3 months ago
- A list of interesting genome browser and genome visualization programs☆1,062Mar 26, 2026Updated 2 weeks ago
- python module to plot beautiful and highly customizable genome browser tracks☆870Jul 10, 2024Updated last year
- MMseqs2: ultra fast and sensitive search and clustering suite☆2,023Apr 4, 2026Updated last week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing☆840Apr 1, 2026Updated 2 weeks ago
- Genome browser and variant annotation☆392Apr 8, 2026Updated last week
- machine-readable file format for genomic library sequence and structure☆128Apr 3, 2026Updated last week
- Tool for plotting sequencing data along genomic coordinates.☆339Dec 12, 2025Updated 4 months ago
- An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)☆2,324Apr 8, 2026Updated last week
- A cross-platform and ultrafast toolkit for FASTA/Q file manipulation☆1,537Mar 31, 2026Updated 2 weeks ago
- An efficient CLI to extract sequences from the SRA☆122Mar 4, 2026Updated last month
- Tool to plot synteny and structural rearrangements between genomes☆344Apr 7, 2025Updated last year
- Genomic interval operations on Pandas DataFrames☆191Apr 6, 2026Updated last week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Deep probabilistic analysis of single-cell and spatial omics data☆1,597Updated this week
- Aggregate results from bioinformatics analyses across many samples into a single report.☆1,439Updated this week
- A declarative interactive genomics visualization library for Python.☆243Nov 24, 2025Updated 4 months ago
- A wrapper for the kallisto | bustools workflow for single-cell RNA-seq pre-processing☆186Mar 11, 2026Updated last month
- A Rust library and command line tool for working with genomic ranges and their data.☆100May 29, 2024Updated last year
- Gene Set Enrichment Analysis in Python☆697Apr 5, 2026Updated last week
- A small database of weird gene annotations☆209Mar 26, 2026Updated 2 weeks ago
- trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and fu…☆102Updated this week
- Command line scientific data management tool☆231Nov 4, 2024Updated last year
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Python library to plot DNA sequence features (e.g. from Genbank files)☆686Jul 2, 2025Updated 9 months ago
- Performant Pythonic GenomicRanges☆494Jan 27, 2026Updated 2 months ago
- Accurate metagenomic profiling && Fast large-scale sequence/genome searching☆208Sep 22, 2023Updated 2 years ago
- Toolkit for processing sequences in FASTA/Q formats☆1,534Jun 1, 2025Updated 10 months ago
- long read RNA-seq quantification☆108Mar 16, 2026Updated 3 weeks ago
- A library of free open source icons for science illustrations in biology and chemistry☆1,631Updated this week
- Biological sequence analysis for the modern age.☆268Feb 22, 2026Updated last month