Alternatives and similar repositories for gget

Users that are interested in gget are comparing it to the libraries listed below

• pachterlab / BI-BE-CS-183-2023
  Introduction to Computational Biology and Bioinformatics Course at Caltech, 2023
  ☆509Updated last year
• owkin / PyDESeq2
  A Python implementation of the DESeq2 pipeline for bulk RNA-seq DEA.
  ☆695Updated last week
• evanpeikon / Bioinformatics_Toolkit
  A growing collection of bioinformatics tutorials, project guides, tools, and articles I’ve developed to make bioinformatics more accessib…
  ☆440Updated 2 weeks ago
• cmdcolin / awesome-genome-visualization
  A list of interesting genome browser and genome visualization programs
  ☆1,023Updated this week
• mikelove / awesome-multi-omics
  List of software packages for multi-omics analysis
  ☆871Updated 3 weeks ago
• pachterlab / ffq
  A tool to find sequencing data and metadata from public databases.
  ☆592Updated last year
• crazyhottommy / scRNAseq-analysis-notes
  scRNAseq analysis notes from Ming Tang
  ☆765Updated 11 months ago
• nf-core / rnaseq
  RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
  ☆1,137Updated this week
• deeptools / pyGenomeTracks
  python module to plot beautiful and highly customizable genome browser tracks
  ☆847Updated last year
• zqfang / GSEApy
  Gene Set Enrichment Analysis in Python
  ☆670Updated 2 weeks ago
• sib-swiss / training-collection
  Collection of bioinformatics training materials
  ☆1,077Updated 3 weeks ago
• Edinburgh-Genome-Foundry / DnaFeaturesViewer
  Python library to plot DNA sequence features (e.g. from Genbank files)
  ☆662Updated 4 months ago
• davidemms / OrthoFinder
  Phylogenetic orthology inference for comparative genomics
  ☆813Updated 4 months ago
• tanghaibao / goatools
  Python library to handle Gene Ontology (GO) terms
  ☆870Updated 2 months ago
• weizhongli / cdhit
  Automatically exported from code.google.com/p/cdhit
  ☆707Updated 3 years ago
• theislab / single-cell-best-practices
  https://www.sc-best-practices.org
  ☆1,055Updated this week
• bionumpy / bionumpy
  Python library for array programming on biological datasets. Documentation available at: https://bionumpy.github.io/bionumpy/
  ☆287Updated 5 months ago
• deanslee / FigureOneLab
  Hone computational biology skills by re-enacting Figure 1 of modern biology papers
  ☆263Updated last year
• eggnogdb / eggnog-mapper
  Fast genome-wide functional annotation through orthology assignment
  ☆669Updated 5 months ago
• bbuchfink / diamond
  Accelerated BLAST compatible local sequence aligner.
  ☆1,204Updated last week
• kblin / ncbi-genome-download
  Scripts to download genomes from the NCBI FTP servers
  ☆1,046Updated 3 months ago
• pyranges / pyranges
  Performant Pythonic GenomicRanges
  ☆489Updated 3 weeks ago
• jorvis / biocode
  Bioinformatics code libraries and scripts
  ☆551Updated 3 months ago
• ViennaRNA / ViennaRNA
  The ViennaRNA Package
  ☆370Updated 3 months ago
• marcelm / cutadapt
  Cutadapt removes adapter sequences from sequencing reads
  ☆565Updated 3 weeks ago
• crazyhottommy / bioinformatics-one-liners
  Bioinformatics one liners from Ming Tang
  ☆495Updated 5 years ago
• Illumina / SpliceAI
  A deep learning-based tool to identify splice variants
  ☆468Updated 4 months ago
• crazyhottommy / RNA-seq-analysis
  RNAseq analysis notes from Ming Tang
  ☆1,050Updated 4 years ago
• tseemann / prokka
  Rapid prokaryotic genome annotation
  ☆941Updated last year
• MultiQC / MultiQC
  Aggregate results from bioinformatics analyses across many samples into a single report.
  ☆1,391Updated this week