Alternatives and similar repositories for straindesign

Users that are interested in straindesign are comparing it to the libraries listed below

• jclachance / BOFdat
  Generate biomass objective function stoichiometric coefficients for genome-scale models from experimental data
  ☆27Updated last year
• ginkgobioworks / geckopy
  Enzyme-constrained genome-scale models in python
  ☆28Updated last year
• SysBioChalmers / GECKO
  Toolbox for including enzyme constraints on a genome-scale model.
  ☆74Updated last month
• cdanielmachado / reframed
  ReFramed: metabolic modeling package
  ☆59Updated last month
• ModelSEED / ModelSEEDpy
  Python package for building and analyzing models using ModelSEED
  ☆23Updated 2 months ago
• SBRG / cobrame
  A COBRApy extension for genome-scale models of metabolism and expression (ME-models)
  ☆36Updated 6 years ago
• pstjohn / d3flux
  D3.js based visualizations of cobrapy metabolic models
  ☆45Updated 5 years ago
• cnapy-org / CNApy
  An integrated visual environment for metabolic modeling with common methods such as FBA, FVA and Elementary Flux Modes, and advanced feat…
  ☆55Updated 4 months ago
• leilahsn / FastKnock
  ☆9Updated last year
• ModelSEED / ModelSEEDDatabase
  This repository contains the definitive copy of the biochemistry and metadata used to construct models using the ModelSEED/ProbAnno appro…
  ☆63Updated 4 months ago
• SystemsBioinformatics / cbmpy
  CBMPy is a Python based platform for constraint based modelling and analysis.
  ☆19Updated last year
• BioSystemsUM / MEWpy
  Metabolic Engineering Workbench
  ☆40Updated last year
• Toepfer-Lab / cobramod
  CobraMod is a Python 3 open-source package which enables modifying and extending genome-scale metabolic models with metabolic pathway inf…
  ☆15Updated last month
• SysBioInra / RBApy
  Python package for creating, calibrating and simulating RBA models
  ☆12Updated 2 years ago
• fumiomatsuda / mfapy
  A python toolbox for 13C metabolic flux analysis
  ☆22Updated 9 months ago
• jdbrunner / surfin_fba
  Dynamic FBA for use with COBRApy metabolic models
  ☆10Updated last year
• EPFL-LCSB / etfl
  ETFL: A formulation for flux balance models accounting for expression, thermodynamics, and resource allocation constraints
  ☆16Updated 10 months ago
• moshi4 / pyMSAviz
  MSA(Multiple Sequence Alignment) visualization python package for sequence analysis
  ☆133Updated 6 months ago
• RamanLab / metquest
  Enumerating biosynthetic pathways in metabolic networks
  ☆12Updated 4 months ago
• soedinglab / spacedust
  Discovery of conserved gene clusters in multiple genomes
  ☆81Updated last month
• AlmaasLab / BiGMeC
  BiGMeC - Biosynthetic Gene cluster Metabolic pathway Constructor
  ☆15Updated 2 years ago
• micom-dev / micom
  Python package to study microbial communities using metabolic modeling.
  ☆103Updated 2 weeks ago
• SBRG / bigg_models
  The BiGG Models website server
  ☆83Updated 5 years ago
• klamt-lab / autopacmen
  Retrieves kcat data and adds protein allocation constraints to stoichiometric metabolic models according to the sMOMENT method
  ☆14Updated 3 months ago
• biosustain / Maud
  Enzyme models that take into account kinetics, allostery and thermodynamics
  ☆27Updated 9 months ago
• latendre / PythonCyc
  ☆22Updated 4 years ago
• mmundy42 / mackinac
  Mackinac: A bridge between ModelSEED and COBRApy
  ☆19Updated 6 years ago
• opencobra / memote
  memote – the genome-scale metabolic model test suite
  ☆133Updated last year
• SysBioChalmers / RAVEN
  The RAVEN Toolbox for genome scale model reconstruction, curation and analysis.
  ☆113Updated last month
• opencobra / m_model_collection
  A collection of M models downloaded from published studies
  ☆16Updated 9 years ago