Alternatives and similar repositories for autopacmen

Users that are interested in autopacmen are comparing it to the libraries listed below

• opencobra / memote
  memote – the genome-scale metabolic model test suite
  ☆136Updated 2 weeks ago
• SysBioChalmers / ecModels
  A container for all enzyme constrained models created by GECKO.
  ☆14Updated 3 years ago
• jclachance / BOFdat
  Generate biomass objective function stoichiometric coefficients for genome-scale models from experimental data
  ☆27Updated 2 years ago
• ginkgobioworks / geckopy
  Enzyme-constrained genome-scale models in python
  ☆28Updated last year
• biosustain / cameo
  cameo - computer aided metabolic engineering & optimization
  ☆118Updated 2 years ago
• cnapy-org / CNApy
  An integrated visual environment for metabolic modeling with common methods such as FBA, FVA and Elementary Flux Modes, and advanced feat…
  ☆57Updated last month
• EPFL-LCSB / etfl
  ETFL: A formulation for flux balance models accounting for expression, thermodynamics, and resource allocation constraints
  ☆16Updated last month
• SysBioChalmers / GECKO
  Toolbox for including enzyme constraints on a genome-scale model.
  ☆77Updated 3 months ago
• pstjohn / d3flux
  D3.js based visualizations of cobrapy metabolic models
  ☆47Updated 5 years ago
• SysBioInra / RBApy
  Python package for creating, calibrating and simulating RBA models
  ☆12Updated 2 years ago
• SBRG / bigg_models
  The BiGG Models website server
  ☆83Updated 5 years ago
• cdanielmachado / carveme
  CarveMe: genome-scale metabolic model reconstruction
  ☆179Updated this week
• SystemsBioinformatics / cbmpy
  CBMPy is a Python based platform for constraint based modelling and analysis.
  ☆19Updated last year
• ModelSEED / ModelSEEDDatabase
  This repository contains the definitive copy of the biochemistry and metadata used to construct models using the ModelSEED/ProbAnno appro…
  ☆62Updated 6 months ago
• klamt-lab / straindesign
  StrainDesign is a python package for the computational design of metabolic networks and based on COBRApy
  ☆43Updated this week
• segrelab / cometspy
  Python interface for running COMETS simulations and analyzing the results
  ☆12Updated this week
• SysBioChalmers / yeast-GEM
  The consensus GEM for Saccharomyces cerevisiae
  ☆111Updated 4 months ago
• EPFL-LCSB / pytfa
  A Python 3 implementation of Thermodynamics-based Flux Analysis
  ☆39Updated last month
• cdanielmachado / reframed
  ReFramed: metabolic modeling package
  ☆59Updated 4 months ago
• SysBioChalmers / RAVEN
  The RAVEN Toolbox for genome scale model reconstruction, curation and analysis.
  ☆113Updated 3 months ago
• micom-dev / micom
  Python package to study microbial communities using metabolic modeling.
  ☆106Updated last week
• opencobra / cobratoolbox
  The COnstraint-Based Reconstruction and Analysis Toolbox. Documentation:
  ☆263Updated this week
• RamanLab / metquest
  Enumerating biosynthetic pathways in metabolic networks
  ☆12Updated 6 months ago
• cdanielmachado / embl_gems
  EMBL GEMs: A collection of GEnome-scale Models for bacterial species
  ☆28Updated 6 years ago
• mmundy42 / mackinac
  Mackinac: A bridge between ModelSEED and COBRApy
  ☆19Updated 7 years ago
• ModelSEED / ModelSEEDpy
  Python package for building and analyzing models using ModelSEED
  ☆23Updated 4 months ago
• mmcguffi / pLannotate
  Webserver and command line tool for annotating engineered plasmids
  ☆125Updated last month
• SBRG / cobrame
  A COBRApy extension for genome-scale models of metabolism and expression (ME-models)
  ☆35Updated 6 years ago
• Merck / deepbgc
  BGC Detection and Classification Using Deep Learning
  ☆152Updated last year
• pydna-group / pydna
  Clone with Python! Data structures for double stranded DNA & simulation of homologous recombination, Gibson assembly, cut & paste cloning…
  ☆194Updated this week