klamt-lab / autopacmen
Retrieves kcat data and adds protein allocation constraints to stoichiometric metabolic models according to the sMOMENT method
☆14Updated 3 weeks ago
Alternatives and similar repositories for autopacmen:
Users that are interested in autopacmen are comparing it to the libraries listed below
- An integrated visual environment for metabolic modeling with common methods such as FBA, FVA and Elementary Flux Modes, and advanced feat…☆51Updated last month
- Generate biomass objective function stoichiometric coefficients for genome-scale models from experimental data☆27Updated last year
- StrainDesign is a python package for the computational design of metabolic networks and based on COBRApy☆41Updated 2 weeks ago
- memote – the genome-scale metabolic model test suite☆131Updated last year
- Enzyme-constrained genome-scale models in python☆25Updated last year
- Toolbox for including enzyme constraints on a genome-scale model.☆70Updated 5 months ago
- Python package for creating, calibrating and simulating RBA models☆12Updated last year
- The consensus GEM for Saccharomyces cerevisiae☆101Updated 3 months ago
- A container for all enzyme constrained models created by GECKO.☆11Updated 2 years ago
- This repository contains the definitive copy of the biochemistry and metadata used to construct models using the ModelSEED/ProbAnno appro…☆59Updated last month
- ReFramed: metabolic modeling package☆58Updated 7 months ago
- CarveMe: genome-scale metabolic model reconstruction☆165Updated 6 months ago
- CBMPy is a Python based platform for constraint based modelling and analysis.☆19Updated 10 months ago
- A COBRApy extension for genome-scale models of metabolism and expression (ME-models)☆36Updated 6 years ago
- The RAVEN Toolbox for genome scale model reconstruction, curation and analysis.☆107Updated 2 months ago
- Python package for building and analyzing models using ModelSEED☆22Updated 2 weeks ago
- D3.js based visualizations of cobrapy metabolic models☆45Updated 5 years ago
- ETFL: A formulation for flux balance models accounting for expression, thermodynamics, and resource allocation constraints☆16Updated 7 months ago
- The BiGG Models website server☆81Updated 5 years ago
- Dynamic FBA for use with COBRApy metabolic models☆10Updated last year
- Computation of Microbial Ecosystems in Time and Space☆22Updated 2 weeks ago
- Teaching materials for cobrapy, cameo, escher and DD-DeCaF☆23Updated 2 years ago
- Python package to study microbial communities using metabolic modeling.☆98Updated 3 weeks ago
- ☆11Updated this week
- A python toolbox for 13C metabolic flux analysis☆20Updated 6 months ago
- cameo - computer aided metabolic engineering & optimization☆115Updated 2 years ago
- Repository of tutorials for The COBRA Toolbox☆21Updated last week
- Mackinac: A bridge between ModelSEED and COBRApy☆19Updated 6 years ago
- EMBL GEMs: A collection of GEnome-scale Models for bacterial species☆25Updated 6 years ago