klamt-lab / autopacmenLinks
Retrieves kcat data and adds protein allocation constraints to stoichiometric metabolic models according to the sMOMENT method
☆15Updated 10 months ago
Alternatives and similar repositories for autopacmen
Users that are interested in autopacmen are comparing it to the libraries listed below
Sorting:
- memote – the genome-scale metabolic model test suite☆143Updated 5 months ago
- An integrated visual environment for metabolic modeling with common methods such as FBA, FVA and Elementary Flux Modes, and advanced feat…☆61Updated 3 weeks ago
- Generate biomass objective function stoichiometric coefficients for genome-scale models from experimental data☆27Updated 2 years ago
- Enzyme-constrained genome-scale models in python☆30Updated 2 years ago
- The BiGG Models website server☆88Updated 6 years ago
- cameo - computer aided metabolic engineering & optimization☆122Updated 3 years ago
- Toolbox for including enzyme constraints on a genome-scale model.☆79Updated last month
- Python package for creating, calibrating and simulating RBA models☆13Updated 2 years ago
- ☆10Updated 2 years ago
- A container for all enzyme constrained models created by GECKO.☆15Updated 3 years ago
- ETFL: A formulation for flux balance models accounting for expression, thermodynamics, and resource allocation constraints☆16Updated 6 months ago
- The consensus GEM for Saccharomyces cerevisiae☆115Updated last month
- This repository contains the definitive copy of the biochemistry and metadata used to construct models using the ModelSEED/ProbAnno appro…☆65Updated last week
- ReFramed: metabolic modeling package☆62Updated 4 months ago
- CarveMe: genome-scale metabolic model reconstruction☆193Updated 4 months ago
- StrainDesign is a python package for the computational design of metabolic networks and based on COBRApy☆47Updated 3 weeks ago
- D3.js based visualizations of cobrapy metabolic models☆50Updated 5 years ago
- The RAVEN Toolbox for genome scale model reconstruction, curation and analysis.☆121Updated last month
- Python interface for running COMETS simulations and analyzing the results☆15Updated 3 months ago
- Mackinac: A bridge between ModelSEED and COBRApy☆19Updated 7 years ago
- The COnstraint-Based Reconstruction and Analysis Toolbox. Documentation:☆278Updated last week
- CBMPy is a Python based platform for constraint based modelling and analysis.☆19Updated last year
- Teaching materials for cobrapy, cameo, escher and DD-DeCaF☆25Updated 3 years ago
- Dynamic FBA for use with COBRApy metabolic models☆10Updated 2 years ago
- Computation of Microbial Ecosystems in Time and Space☆26Updated last month
- Enumerating biosynthetic pathways in metabolic networks☆13Updated 11 months ago
- A Python 3 implementation of Thermodynamics-based Flux Analysis☆42Updated 6 months ago
- A COBRApy extension for genome-scale models of metabolism and expression (ME-models)☆35Updated 7 years ago
- The generic genome-scale metabolic model of Homo sapiens☆125Updated 2 weeks ago
- framed: a metabolic modeling package for python☆26Updated 6 years ago