opencobra / MASS-ToolboxLinks
Mass Action Stoichiometric Simulation (MASS) Toolbox
☆11Updated 7 years ago
Alternatives and similar repositories for MASS-Toolbox
Users that are interested in MASS-Toolbox are comparing it to the libraries listed below
Sorting:
- Data-Driven Constraint-based analysis☆12Updated 2 years ago
- High-level, high-performance, constraint-based reconstruction and analysis in Julia☆62Updated 2 years ago
- Repository of tutorials for The COBRA Toolbox☆22Updated last week
- Build and test new apps for the KBase platform☆28Updated 4 months ago
- MathIOmica is a Mathematica package for omics data analyses☆12Updated last year
- framed: a metabolic modeling package for python☆26Updated 5 years ago
- Encoding Dynamic Flux Balance Analysis in SBML☆12Updated 4 years ago
- A COBRApy extension for genome-scale models of metabolism and expression (ME-models)☆36Updated 6 years ago
- Curation and analysis of metabolic models☆35Updated last year
- An application for parameterization of biological models available in SBML and BNGL formats. Features include parallelization, metaheuris…☆24Updated last year
- CobraMod is a Python 3 open-source package which enables modifying and extending genome-scale metabolic models with metabolic pathway inf…☆15Updated last month
- Standard reaction Gibbs energy estimation for biochemical reactions☆17Updated 6 years ago
- Mackinac: A bridge between ModelSEED and COBRApy☆19Updated 6 years ago
- Constraint-Based Reconstruction and EXascale Analysis☆44Updated 8 months ago
- ☆22Updated 4 years ago
- COBRAdb loads genome-scale metabolic models and genome annotations into a relational database. It already powers BiGG Models, and it is a…☆20Updated 5 years ago
- Parsing MHC nomenclature in the wild☆16Updated 3 months ago
- MOCCASIN translates basic ODE-based MATLAB models of biological processes into SBML format.☆12Updated 10 months ago
- Analysis of ensembles of metabolic network reconstructions☆21Updated 2 years ago
- JBEI Quantitative Metabolic Modeling library☆12Updated 5 years ago
- cy3sbml: SBML for Cytoscape 3☆14Updated this week
- MATLAB Development Tools☆28Updated 9 months ago
- The BiGG Models website server☆83Updated 5 years ago
- Dynamic Flux Balance analysis in Python☆11Updated 9 years ago
- A standalone program that reads files created with the graphical network editor Escher and converts them to files in community standard f…☆16Updated 3 weeks ago
- Julia's package for working on Bioinformatics with DNA, RNA and Protein Sequences☆28Updated 5 years ago
- Enzyme-constrained genome-scale models in python☆28Updated last year
- Coral, a library and framework for specifying synthetic biology design processes.☆33Updated 2 years ago
- The SBML Test Suite is a conformance testing system. It allows developers and users to test the degree and correctness of the SBML suppor…☆26Updated 2 months ago
- A tool for creating Python implementations of SBML models.☆14Updated 2 years ago