opencobra / MASS-ToolboxLinks
Mass Action Stoichiometric Simulation (MASS) Toolbox
☆11Updated 8 years ago
Alternatives and similar repositories for MASS-Toolbox
Users that are interested in MASS-Toolbox are comparing it to the libraries listed below
Sorting:
- Data-Driven Constraint-based analysis☆12Updated 2 years ago
- MathIOmica is a Mathematica package for omics data analyses☆12Updated 2 years ago
- An application for parameterization of biological models available in SBML and BNGL formats. Features include parallelization, metaheuris…☆24Updated last week
- Curation and analysis of metabolic models☆35Updated 2 years ago
- A general-purpose, stochastic, biochemical reaction simulator for large reaction networks☆14Updated 3 months ago
- Rule-based modeling framework☆64Updated 2 months ago
- COMBINE-compliant implementation of the Mycoplasma genitalium whole-cell model☆10Updated 9 years ago
- Fast and scalable cell search tool☆44Updated 6 years ago
- MOCCASIN translates basic ODE-based MATLAB models of biological processes into SBML format.☆12Updated 11 months ago
- COBRAdb loads genome-scale metabolic models and genome annotations into a relational database. It already powers BiGG Models, and it is a…☆20Updated 5 years ago
- Build and test new apps for the KBase platform☆28Updated 5 months ago
- High-level, high-performance, constraint-based reconstruction and analysis in Julia☆62Updated 2 years ago
- Encoding Dynamic Flux Balance Analysis in SBML☆12Updated 4 years ago
- Repository of tutorials for The COBRA Toolbox☆22Updated this week
- A COBRApy extension for genome-scale models of metabolism and expression (ME-models)☆35Updated 6 years ago
- The SBML Test Suite is a conformance testing system. It allows developers and users to test the degree and correctness of the SBML suppor…☆26Updated 3 weeks ago
- web based visualisation of molecular interaction data☆12Updated 2 months ago
- Boolean Network Modeling☆40Updated 5 years ago
- COPASI is a software application for simulation and analysis of biochemical networks and their dynamics.☆113Updated last week
- ☆22Updated 4 years ago
- The BiGG Models website server☆83Updated 5 years ago
- Coral, a library and framework for specifying synthetic biology design processes.☆33Updated 2 years ago
- Jupyter widget for the dynamic and static visualizations of systems biology models written in PySB, BNGL, and SBML☆27Updated 2 years ago
- Mackinac: A bridge between ModelSEED and COBRApy☆19Updated 6 years ago
- Core types and interfaces for BioJulia packages☆31Updated 6 years ago
- Python Environment for Modeling and Simulating Biological Systems☆123Updated 3 weeks ago
- Caleydo - Visualization for Molecular Biology☆59Updated 8 years ago
- ☆12Updated 7 years ago
- Dynamic Flux Balance analysis in Python☆11Updated 9 years ago
- libRoadRunner: A high-performance SBML simulator☆51Updated 3 weeks ago