Mass Action Stoichiometric Simulation (MASS) Toolbox
☆12Aug 1, 2017Updated 8 years ago
Alternatives and similar repositories for MASS-Toolbox
Users that are interested in MASS-Toolbox are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- High-level, high-performance, constraint-based reconstruction and analysis in Julia☆63Apr 26, 2023Updated 2 years ago
- MATLAB Development Tools☆28Sep 27, 2024Updated last year
- A standalone program that reads files created with the graphical network editor Escher and converts them to files in community standard f…☆16Mar 4, 2026Updated 3 weeks ago
- Data-Driven Constraint-based analysis☆12Nov 4, 2022Updated 3 years ago
- ☆10Jul 4, 2019Updated 6 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- xarray interface for bpch files☆17Nov 27, 2023Updated 2 years ago
- Deprecated: please use GillesPy2☆12Oct 15, 2019Updated 6 years ago
- ☆23Aug 28, 2020Updated 5 years ago
- A tool for creating Python implementations of SBML models.☆15Oct 5, 2022Updated 3 years ago
- pykpp is a KPP-like chemical mechanism parser that produces a box model solvable by SciPy's odeint solver☆18May 9, 2025Updated 10 months ago
- COMBINE-compliant implementation of the Mycoplasma genitalium whole-cell model☆10Feb 29, 2016Updated 10 years ago
- Python Environment for Reaction Mechanisms/Mathematics provides dynamic analysis tools for evaluating chemical networks easily.☆19Nov 27, 2020Updated 5 years ago
- Mackinac: A bridge between ModelSEED and COBRApy☆19Aug 20, 2018Updated 7 years ago
- Dynamically Simple Model of Atmospheric Chemical Complexity☆25Mar 18, 2025Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- JavaScript-based pathway viewer and editor☆35Feb 20, 2025Updated last year
- The COnstraint-Based Reconstruction and Analysis Toolbox. Documentation:☆279Mar 16, 2026Updated last week
- Typeset scattered graph data rewriter based on LaTeX nodes☆13Apr 7, 2021Updated 4 years ago
- ☆10Jun 2, 2018Updated 7 years ago
- COBRApy is a package for constraint-based modeling of metabolic networks.☆551Dec 4, 2025Updated 3 months ago
- Asynchronous job and file i/o management for containers☆15Dec 9, 2022Updated 3 years ago
- ☆10Dec 4, 2019Updated 6 years ago
- Repository of tutorials for The COBRA Toolbox☆25Mar 16, 2026Updated last week
- Website for visualizing predicted drug side-effects using L1000 data (http://maayanlab.net/SEP-L1000/)☆10Apr 15, 2022Updated 3 years ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Accompanying code for AAAI 2021 publication - High-Dimensional Bayesian Optimization via Tree-Structured Additive Models☆11Jun 19, 2024Updated last year
- Compute sunrise and sunset times from geographical location, and reverse function☆11Sep 14, 2022Updated 3 years ago
- ☆21Jul 12, 2016Updated 9 years ago
- Beiwe is a smartphone-based digital phenotyping research platform. This repository contains some data analysis code.☆14Feb 10, 2020Updated 6 years ago
- METIS: A versatile active learning workflow for optimization of genetic and metabolic networks☆34Nov 7, 2022Updated 3 years ago
- Dynamic FBA for use with COBRApy metabolic models☆10Sep 26, 2023Updated 2 years ago
- de Bruijn Workflow using Integral information of Short pair End reads☆13Aug 21, 2024Updated last year
- A 3-Dimensional View of Human Metabolism and Disease☆32Feb 28, 2018Updated 8 years ago
- ☆11Feb 4, 2021Updated 5 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- Teaching materials for cobrapy, cameo, escher and DD-DeCaF☆26Jul 12, 2022Updated 3 years ago
- ☆11Jul 6, 2023Updated 2 years ago
- STAT540 Statistical Methods for High Dimensional Biology, January - April 2014☆17Apr 28, 2014Updated 11 years ago
- A multi-reference network annotation tool to support omics analysis☆12May 31, 2022Updated 3 years ago
- A general-purpose, stochastic, biochemical reaction simulator for large reaction networks☆14Mar 16, 2026Updated last week
- Python implementation of the BRIM algorithm for bipartite community structure detection.☆12Aug 11, 2022Updated 3 years ago
- Generate Robust Disease-Specific Response Signatures from the LINCS-L1000 Data☆16Jan 21, 2022Updated 4 years ago