cnapy-org / CNApyLinks
An integrated visual environment for metabolic modeling with common methods such as FBA, FVA and Elementary Flux Modes, and advanced features such as thermodynamic methods, extended Minimal Cut Sets, OptKnock, RobustKnock, OptCouple and more!
☆58Updated last week
Alternatives and similar repositories for CNApy
Users that are interested in CNApy are comparing it to the libraries listed below
Sorting:
- Enzyme-constrained genome-scale models in python☆28Updated last year
- StrainDesign is a python package for the computational design of metabolic networks and based on COBRApy☆43Updated 2 weeks ago
- D3.js based visualizations of cobrapy metabolic models☆47Updated 5 years ago
- Metabolic Engineering Workbench☆40Updated last year
- A COBRApy extension for genome-scale models of metabolism and expression (ME-models)☆35Updated 6 years ago
- memote – the genome-scale metabolic model test suite☆139Updated last month
- This repository contains the definitive copy of the biochemistry and metadata used to construct models using the ModelSEED/ProbAnno appro…☆62Updated 7 months ago
- Toolbox for including enzyme constraints on a genome-scale model.☆76Updated 2 weeks ago
- CobraMod is a Python 3 open-source package which enables modifying and extending genome-scale metabolic models with metabolic pathway inf…☆15Updated last month
- Mackinac: A bridge between ModelSEED and COBRApy☆19Updated 7 years ago
- Enumerating biosynthetic pathways in metabolic networks☆12Updated 7 months ago
- Python package for building and analyzing models using ModelSEED☆23Updated 5 months ago
- Generate biomass objective function stoichiometric coefficients for genome-scale models from experimental data☆27Updated 2 years ago
- cameo - computer aided metabolic engineering & optimization☆118Updated 2 years ago
- Retrieves kcat data and adds protein allocation constraints to stoichiometric metabolic models according to the sMOMENT method☆15Updated 6 months ago
- ReFramed: metabolic modeling package☆60Updated 4 months ago
- Computation of Microbial Ecosystems in Time and Space☆25Updated last month
- The BiGG Models website server☆83Updated 5 years ago
- Python package for creating, calibrating and simulating RBA models☆12Updated 2 years ago
- Python package to study microbial communities using metabolic modeling.☆107Updated last week
- The RAVEN Toolbox for genome scale model reconstruction, curation and analysis.☆113Updated last week
- CBMPy is a Python based platform for constraint based modelling and analysis.☆19Updated last year
- Analysis of ensembles of metabolic network reconstructions☆21Updated 2 weeks ago
- BiGMeC - Biosynthetic Gene cluster Metabolic pathway Constructor☆15Updated 2 years ago
- Dynamic FBA for use with COBRApy metabolic models☆10Updated last year
- Teaching materials for cobrapy, cameo, escher and DD-DeCaF☆24Updated 3 years ago
- Repository of tutorials for The COBRA Toolbox☆23Updated 3 weeks ago
- Python interface for running COMETS simulations and analyzing the results☆12Updated last week
- ☆27Updated last year
- Enzyme models that take into account kinetics, allostery and thermodynamics☆27Updated last year