Alternatives and similar repositories for CNApy:

Users that are interested in CNApy are comparing it to the libraries listed below

• klamt-lab / straindesign
  StrainDesign is a python package for the computational design of metabolic networks and based on COBRApy
  ☆42Updated 3 weeks ago
• klamt-lab / autopacmen
  Retrieves kcat data and adds protein allocation constraints to stoichiometric metabolic models according to the sMOMENT method
  ☆14Updated last month
• ModelSEED / ModelSEEDpy
  Python package for building and analyzing models using ModelSEED
  ☆22Updated 3 weeks ago
• segrelab / comets
  Computation of Microbial Ecosystems in Time and Space
  ☆22Updated 3 weeks ago
• SBRG / cobrame
  A COBRApy extension for genome-scale models of metabolism and expression (ME-models)
  ☆36Updated 6 years ago
• jclachance / BOFdat
  Generate biomass objective function stoichiometric coefficients for genome-scale models from experimental data
  ☆27Updated last year
• ginkgobioworks / geckopy
  Enzyme-constrained genome-scale models in python
  ☆26Updated last year
• ModelSEED / ModelSEEDDatabase
  This repository contains the definitive copy of the biochemistry and metadata used to construct models using the ModelSEED/ProbAnno appro…
  ☆60Updated 2 months ago
• SysBioChalmers / GECKO
  Toolbox for including enzyme constraints on a genome-scale model.
  ☆70Updated 5 months ago
• pstjohn / d3flux
  D3.js based visualizations of cobrapy metabolic models
  ☆45Updated 5 years ago
• jdbrunner / surfin_fba
  Dynamic FBA for use with COBRApy metabolic models
  ☆10Updated last year
• SystemsBioinformatics / cbmpy
  CBMPy is a Python based platform for constraint based modelling and analysis.
  ☆19Updated 10 months ago
• Toepfer-Lab / cobramod
  CobraMod is a Python 3 open-source package which enables modifying and extending genome-scale metabolic models with metabolic pathway inf…
  ☆13Updated 7 months ago
• BioSystemsUM / MEWpy
  Metabolic Engineering Workbench
  ☆40Updated 9 months ago
• opencobra / memote
  memote – the genome-scale metabolic model test suite
  ☆132Updated last year
• cdanielmachado / reframed
  ReFramed: metabolic modeling package
  ☆58Updated 7 months ago
• micom-dev / micom
  Python package to study microbial communities using metabolic modeling.
  ☆97Updated this week
• opencobra / m_model_collection
  A collection of M models downloaded from published studies
  ☆16Updated 9 years ago
• SysBioInra / RBApy
  Python package for creating, calibrating and simulating RBA models
  ☆12Updated last year
• RamanLab / metquest
  Enumerating biosynthetic pathways in metabolic networks
  ☆12Updated last month
• segrelab / cometspy
  Python interface for running COMETS simulations and analyzing the results
  ☆12Updated last month
• opencobra / COBRA.tutorials
  Repository of tutorials for The COBRA Toolbox
  ☆21Updated this week
• SBRG / bigg_models
  The BiGG Models website server
  ☆82Updated 5 years ago
• cdanielmachado / embl_gems
  EMBL GEMs: A collection of GEnome-scale Models for bacterial species
  ☆25Updated 6 years ago
• AlmaasLab / BiGMeC
  BiGMeC - Biosynthetic Gene cluster Metabolic pathway Constructor
  ☆14Updated last year
• EPFL-LCSB / pytfa
  A Python 3 implementation of Thermodynamics-based Flux Analysis
  ☆39Updated 2 months ago
• MetabolicAtlas / standard-GEM
  The standard for open-source GEMs on GitHub
  ☆19Updated last year
• SysBioChalmers / RAVEN
  The RAVEN Toolbox for genome scale model reconstruction, curation and analysis.
  ☆107Updated 2 months ago
• mmundy42 / mackinac
  Mackinac: A bridge between ModelSEED and COBRApy
  ☆19Updated 6 years ago
• EPFL-LCSB / etfl
  ETFL: A formulation for flux balance models accounting for expression, thermodynamics, and resource allocation constraints
  ☆16Updated 7 months ago