cnapy-org / CNApy
An integrated visual environment for metabolic modeling with common methods such as FBA, FVA and Elementary Flux Modes, and advanced features such as thermodynamic methods, extended Minimal Cut Sets, OptKnock, RobustKnock, OptCouple and more!
☆51Updated 3 weeks ago
Alternatives and similar repositories for CNApy:
Users that are interested in CNApy are comparing it to the libraries listed below
- StrainDesign is a python package for the computational design of metabolic networks and based on COBRApy☆41Updated 2 weeks ago
- Enzyme-constrained genome-scale models in python☆25Updated last year
- A COBRApy extension for genome-scale models of metabolism and expression (ME-models)☆36Updated 6 years ago
- Generate biomass objective function stoichiometric coefficients for genome-scale models from experimental data☆27Updated last year
- CobraMod is a Python 3 open-source package which enables modifying and extending genome-scale metabolic models with metabolic pathway inf…☆13Updated 7 months ago
- Retrieves kcat data and adds protein allocation constraints to stoichiometric metabolic models according to the sMOMENT method☆14Updated 3 weeks ago
- Python package for building and analyzing models using ModelSEED☆22Updated 2 weeks ago
- Metabolic Engineering Workbench☆39Updated 9 months ago
- Dynamic FBA for use with COBRApy metabolic models☆10Updated last year
- Repository of tutorials for The COBRA Toolbox☆21Updated last week
- ReFramed: metabolic modeling package☆58Updated 7 months ago
- Computation of Microbial Ecosystems in Time and Space☆22Updated 2 weeks ago
- Python package for creating, calibrating and simulating RBA models☆12Updated last year
- Toolbox for including enzyme constraints on a genome-scale model.☆70Updated 5 months ago
- ETFL: A formulation for flux balance models accounting for expression, thermodynamics, and resource allocation constraints☆16Updated 7 months ago
- D3.js based visualizations of cobrapy metabolic models☆45Updated 5 years ago
- A collection of M models downloaded from published studies☆16Updated 9 years ago
- This repository contains the definitive copy of the biochemistry and metadata used to construct models using the ModelSEED/ProbAnno appro…☆59Updated last month
- memote – the genome-scale metabolic model test suite☆131Updated last year
- The BiGG Models website server☆81Updated 5 years ago
- Mackinac: A bridge between ModelSEED and COBRApy☆19Updated 6 years ago
- Enumerating biosynthetic pathways in metabolic networks☆12Updated last month
- CBMPy is a Python based platform for constraint based modelling and analysis.☆19Updated 10 months ago
- framed: a metabolic modeling package for python☆26Updated 5 years ago
- Teaching materials for cobrapy, cameo, escher and DD-DeCaF☆23Updated 2 years ago
- Python package to study microbial communities using metabolic modeling.☆97Updated 2 weeks ago
- A Python 3 implementation of Thermodynamics-based Flux Analysis☆39Updated last month
- Reconstruction algorithms for Python☆24Updated 4 months ago
- BiGMeC - Biosynthetic Gene cluster Metabolic pathway Constructor☆14Updated last year