An integrated visual environment for metabolic modeling methods such as FBA, FVA and Elementary Flux Modes, and advanced features such as thermodynamic methods, extended Minimal Cut Sets, OptKnock, RobustKnock, OptCouple and more!
☆70Sep 22, 2026Updated last week
Alternatives and similar repositories for CNApy
Users that are interested in CNApy are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- StrainDesign is a python package for the computational design of metabolic networks and based on COBRApy☆53Sep 22, 2026Updated last week
- Retrieves kcat data and adds protein allocation constraints to stoichiometric metabolic models according to the sMOMENT method. Also chec…☆17Feb 28, 2025Updated last year
- A Python package for "classic" Constraint-Based Reconstruction and Analysis (COBRA) and the new COBRA with kinetics (COBRA-k). Link to do…☆22Sep 18, 2026Updated 2 weeks ago
- CobraMod is a Python 3 open-source package which enables modifying and extending genome-scale metabolic models with metabolic pathway inf…☆19May 11, 2026Updated 4 months ago
- Python package for building and analyzing models using ModelSEED☆31Feb 11, 2026Updated 7 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- An implementation of genome-scale model reconstruction using Cost Optimization Reaction Dependency Assessment by Schultz et. al☆27Jul 15, 2024Updated 2 years ago
- D3.js based visualizations of cobrapy metabolic models☆55Mar 10, 2020Updated 6 years ago
- ☆20Aug 29, 2025Updated last year
- ReFramed: metabolic modeling package☆64Jun 26, 2026Updated 3 months ago
- SMETANA: a tool to analyse interactions in microbial communities☆76May 6, 2025Updated last year
- The official PySCeS project source code repository.☆40Mar 20, 2026Updated 6 months ago
- mergem is a python package and command-line tool for merging, comparing, and translating genome-scale metabolic models☆15Aug 20, 2025Updated last year
- A constraint-based method for prediction of metabolic engineering targets using ecModels of metabolism☆15Feb 12, 2025Updated last year
- Metabolic Engineering Workbench☆43Jun 9, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- cameo - computer aided metabolic engineering & optimization☆129Nov 7, 2022Updated 3 years ago
- Uncover organisms' metabolic blueprints☆18Jun 18, 2024Updated 2 years ago
- ☆11Oct 21, 2023Updated 2 years ago
- Python package for creating, calibrating and simulating RBA models☆14Aug 19, 2026Updated last month
- Informed prediction and analysis of bacterial metabolic pathways and genome-scale networks☆228Sep 22, 2026Updated last week
- Mackinac: A bridge between ModelSEED and COBRApy☆19Aug 20, 2018Updated 8 years ago
- From annotated genomes to metabolic screening in large scale microbiotas☆76Jul 27, 2026Updated 2 months ago
- Python package to study microbial communities using metabolic modeling.☆138Updated this week
- ☆24Oct 19, 2023Updated 2 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Teaching materials for cobrapy, cameo, escher and DD-DeCaF☆28Jul 12, 2022Updated 4 years ago
- CBMPy is a Python based platform for constraint based modelling and analysis.☆20May 26, 2026Updated 4 months ago
- COBRApy is a package for constraint-based modeling of metabolic networks.☆588Sep 17, 2026Updated 2 weeks ago
- A simplified python interface to COPASI.☆28Sep 14, 2026Updated 2 weeks ago
- FLYCOP (FLexible sYnthetic Consortium OPtimization)☆12Sep 24, 2018Updated 8 years ago
- Enzyme-constrained genome-scale models in python☆38Oct 25, 2023Updated 2 years ago
- The RAVEN Toolbox for genome scale model reconstruction, curation and analysis.☆131Updated this week
- Constraint-Based Reconstruction and EXascale Analysis☆46Oct 23, 2024Updated last year
- An alternative approach to capture the breadth of cellular functions by performing a functional analysis of existing biological networks.☆16Oct 19, 2022Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Chimera: An easy to use pipeline for Genome based Metabolic Network reconstruction, evaluation and visualization.☆20Oct 21, 2022Updated 3 years ago
- ETFL: A formulation for flux balance models accounting for expression, thermodynamics, and resource allocation constraints☆19Jul 8, 2025Updated last year
- Pathway-based and phylogenetically adjusted quantification of competition and cooperation between microbial species☆21Mar 17, 2021Updated 5 years ago
- Toolkit for Modelling and Simulation of Gene Expressions and Metabolism☆13Apr 1, 2026Updated 6 months ago
- Reconstruction algorithms for Python☆28Oct 23, 2024Updated last year
- The BiGG Models website server☆93Nov 7, 2019Updated 6 years ago
- An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within micro…☆273May 13, 2026Updated 4 months ago