cnapy-org / CNApyLinks
An integrated visual environment for metabolic modeling with common methods such as FBA, FVA and Elementary Flux Modes, and advanced features such as thermodynamic methods, extended Minimal Cut Sets, OptKnock, RobustKnock, OptCouple and more!
☆54Updated 3 months ago
Alternatives and similar repositories for CNApy
Users that are interested in CNApy are comparing it to the libraries listed below
Sorting:
- Enzyme-constrained genome-scale models in python☆28Updated last year
- StrainDesign is a python package for the computational design of metabolic networks and based on COBRApy☆42Updated 3 months ago
- Retrieves kcat data and adds protein allocation constraints to stoichiometric metabolic models according to the sMOMENT method☆14Updated 3 months ago
- Generate biomass objective function stoichiometric coefficients for genome-scale models from experimental data☆27Updated last year
- Python package for creating, calibrating and simulating RBA models☆12Updated 2 years ago
- CBMPy is a Python based platform for constraint based modelling and analysis.☆19Updated last year
- CobraMod is a Python 3 open-source package which enables modifying and extending genome-scale metabolic models with metabolic pathway inf…☆14Updated last month
- Python package for building and analyzing models using ModelSEED☆23Updated last month
- Toolbox for including enzyme constraints on a genome-scale model.☆71Updated 3 weeks ago
- Dynamic FBA for use with COBRApy metabolic models☆10Updated last year
- A COBRApy extension for genome-scale models of metabolism and expression (ME-models)☆36Updated 6 years ago
- ReFramed: metabolic modeling package☆59Updated last month
- Metabolic Engineering Workbench☆40Updated 11 months ago
- This repository contains the definitive copy of the biochemistry and metadata used to construct models using the ModelSEED/ProbAnno appro…☆61Updated 4 months ago
- ETFL: A formulation for flux balance models accounting for expression, thermodynamics, and resource allocation constraints☆16Updated 9 months ago
- Repository of tutorials for The COBRA Toolbox☆22Updated last month
- D3.js based visualizations of cobrapy metabolic models☆45Updated 5 years ago
- Computation of Microbial Ecosystems in Time and Space☆24Updated last month
- The BiGG Models website server☆82Updated 5 years ago
- ☆9Updated last year
- Python interface for running COMETS simulations and analyzing the results☆12Updated 4 months ago
- Enumerating biosynthetic pathways in metabolic networks☆12Updated 4 months ago
- memote – the genome-scale metabolic model test suite☆132Updated last year
- A collection of M models downloaded from published studies☆16Updated 9 years ago
- Python package to study microbial communities using metabolic modeling.☆100Updated 2 weeks ago
- Mackinac: A bridge between ModelSEED and COBRApy☆19Updated 6 years ago
- EMBL GEMs: A collection of GEnome-scale Models for bacterial species☆28Updated 6 years ago
- BiGMeC - Biosynthetic Gene cluster Metabolic pathway Constructor☆15Updated 2 years ago
- Enzyme models that take into account kinetics, allostery and thermodynamics☆27Updated 9 months ago
- Teaching materials for cobrapy, cameo, escher and DD-DeCaF☆24Updated 2 years ago