cnapy-org / CNApy
An integrated visual environment for metabolic modeling with common methods such as FBA, FVA and Elementary Flux Modes, and advanced features such as thermodynamic methods, extended Minimal Cut Sets, OptKnock, RobustKnock, OptCouple and more!
☆46Updated last month
Related projects ⓘ
Alternatives and complementary repositories for CNApy
- StrainDesign is a python package for the computational design of metabolic networks and based on COBRApy☆39Updated last month
- Enzyme-constrained genome-scale models in python☆25Updated last year
- Retrieves kcat data and adds protein allocation constraints to stoichiometric metabolic models according to the sMOMENT method☆13Updated last year
- Generate biomass objective function stoichiometric coefficients for genome-scale models from experimental data☆26Updated last year
- Toolbox for including enzyme constraints on a genome-scale model.☆67Updated last month
- A COBRApy extension for genome-scale models of metabolism and expression (ME-models)☆34Updated 5 years ago
- Python package for creating, calibrating and simulating RBA models☆11Updated last year
- Computation of Microbial Ecosystems in Time and Space☆19Updated 2 weeks ago
- CBMPy is a Python based platform for constraint based modelling and analysis.☆18Updated 6 months ago
- ReFramed: metabolic modeling package☆56Updated 3 months ago
- Dynamic FBA for use with COBRApy metabolic models☆10Updated last year
- This repository contains the definitive copy of the biochemistry and metadata used to construct models using the ModelSEED/ProbAnno appro…☆57Updated last month
- The BiGG Models website server☆80Updated 5 years ago
- memote – the genome-scale metabolic model test suite☆128Updated 10 months ago
- CobraMod is a Python 3 open-source package which enables modifying and extending genome-scale metabolic models with metabolic pathway inf…☆13Updated 3 months ago
- Metabolic Engineering Workbench☆37Updated 5 months ago
- Python package for building and analyzing models using ModelSEED☆19Updated 2 weeks ago
- D3.js based visualizations of cobrapy metabolic models☆41Updated 4 years ago
- ETFL: A formulation for flux balance models accounting for expression, thermodynamics, and resource allocation constraints☆16Updated 3 months ago
- Python package to study microbial communities using metabolic modeling.☆94Updated this week
- The standard for open-source GEMs on GitHub☆19Updated last year
- A collection of M models downloaded from published studies☆15Updated 8 years ago
- Enzyme models that take into account kinetics, allostery and thermodynamics☆27Updated 2 months ago
- Enumerating biosynthetic pathways in metabolic networks☆12Updated last year
- EMBL GEMs: A collection of GEnome-scale Models for bacterial species☆25Updated 5 years ago
- The RAVEN Toolbox for genome scale model reconstruction, curation and analysis.☆101Updated last week
- A Python 3 implementation of Thermodynamics-based Flux Analysis☆38Updated last month
- teemi: A Python package for reproducible and FAIR microbial strain construction. Simulate the entire dbtl-cycle, generate genetic parts, …☆37Updated 3 weeks ago
- A high-fidelity E. coli RNA-seq compendium☆32Updated 3 years ago
- A python toolbox for 13C metabolic flux analysis☆19Updated 2 months ago