Alternatives and similar repositories for cobrame

Users that are interested in cobrame are comparing it to the libraries listed below

• pstjohn / d3flux
  D3.js based visualizations of cobrapy metabolic models
  ☆47Updated 5 years ago
• opencobra / COBRA.tutorials
  Repository of tutorials for The COBRA Toolbox
  ☆23Updated last week
• biosustain / cameo
  cameo - computer aided metabolic engineering & optimization
  ☆120Updated 2 years ago
• SBRG / bigg_models
  The BiGG Models website server
  ☆84Updated 5 years ago
• latendre / PythonCyc
  ☆22Updated 5 years ago
• jclachance / BOFdat
  Generate biomass objective function stoichiometric coefficients for genome-scale models from experimental data
  ☆27Updated 2 years ago
• mmundy42 / mackinac
  Mackinac: A bridge between ModelSEED and COBRApy
  ☆19Updated 7 years ago
• klamt-lab / straindesign
  StrainDesign is a python package for the computational design of metabolic networks and based on COBRApy
  ☆46Updated last month
• ginkgobioworks / geckopy
  Enzyme-constrained genome-scale models in python
  ☆28Updated 2 years ago
• cdanielmachado / reframed
  ReFramed: metabolic modeling package
  ☆61Updated last month
• matthiaskoenig / dfba
  Encoding Dynamic Flux Balance Analysis in SBML
  ☆12Updated 5 years ago
• BioSystemsUM / MEWpy
  Metabolic Engineering Workbench
  ☆40Updated last year
• SBRG / ssbio
  A Python framework for structural systems biology
  ☆109Updated 4 years ago
• cnapy-org / CNApy
  An integrated visual environment for metabolic modeling with common methods such as FBA, FVA and Elementary Flux Modes, and advanced feat…
  ☆58Updated last week
• cdanielmachado / framed
  framed: a metabolic modeling package for python
  ☆26Updated 5 years ago
• segrelab / comets
  Computation of Microbial Ecosystems in Time and Space
  ☆26Updated last week
• opencobra / Medusa
  Analysis of ensembles of metabolic network reconstructions
  ☆21Updated last month
• SysBioChalmers / GECKO
  Toolbox for including enzyme constraints on a genome-scale model.
  ☆78Updated last week
• Edinburgh-Genome-Foundry / DnaCauldron
  Simple cloning simulator (Golden Gate etc.) for single and combinatorial assemblies
  ☆62Updated 5 months ago
• SystemsBioinformatics / cbmpy
  CBMPy is a Python based platform for constraint based modelling and analysis.
  ☆19Updated last year
• opencobra / memote
  memote – the genome-scale metabolic model test suite
  ☆143Updated 2 months ago
• ModelSEED / ModelSEEDDatabase
  This repository contains the definitive copy of the biochemistry and metadata used to construct models using the ModelSEED/ProbAnno appro…
  ☆62Updated 8 months ago
• biosustain / Maud
  Enzyme models that take into account kinetics, allostery and thermodynamics
  ☆27Updated last year
• draeger-lab / ModelPolisher
  ModelPolisher accesses the BiGG Models knowledgebase to annotate SBML models.
  ☆23Updated 9 months ago
• SBRG / MASSpy
  ☆25Updated 2 years ago
• ablab / npdtools
  Natural Product Discovery tools -- a toolkit containing various pipelines for in silico analysis of natural product mass spectrometry da…
  ☆28Updated 3 years ago
• RamanLab / metquest
  Enumerating biosynthetic pathways in metabolic networks
  ☆12Updated 8 months ago
• SBRG / precise-db
  A high-fidelity E. coli RNA-seq compendium
  ☆33Updated 4 years ago
• Lattice-Automation / seqfold
  nucleic acid folding
  ☆105Updated 2 months ago
• jdbrunner / surfin_fba
  Dynamic FBA for use with COBRApy metabolic models
  ☆10Updated 2 years ago