A COBRApy extension for genome-scale models of metabolism and expression (ME-models)
☆39Jan 11, 2019Updated 7 years ago
Alternatives and similar repositories for cobrame
Users that are interested in cobrame are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Generate biomass objective function stoichiometric coefficients for genome-scale models from experimental data☆28Jul 6, 2023Updated 3 years ago
- A collection of M models downloaded from published studies☆17Feb 18, 2016Updated 10 years ago
- COBRApy is a package for constraint-based modeling of metabolic networks.☆579Updated this week
- A tutorial on cobrapy☆10Nov 23, 2022Updated 3 years ago
- Repository of tutorials for The COBRA Toolbox☆25Apr 27, 2026Updated 3 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- A constraint-based method for prediction of metabolic engineering targets using ecModels of metabolism☆15Feb 12, 2025Updated last year
- ReFramed: metabolic modeling package☆64Jun 26, 2026Updated last month
- Teaching materials for cobrapy, cameo, escher and DD-DeCaF☆28Jul 12, 2022Updated 4 years ago
- Please use opencobra/escher for current Escher development. That repository is the preferred home for the latest community-maintained ver…☆236May 12, 2026Updated 2 months ago
- A Python framework for structural systems biology☆109Dec 7, 2020Updated 5 years ago
- The consensus GEM for Saccharomyces cerevisiae☆129Jul 1, 2026Updated last month
- A Universal Modeling Language for Metabolic Flux Analysis☆12Mar 6, 2025Updated last year
- cameo - computer aided metabolic engineering & optimization☆127Nov 7, 2022Updated 3 years ago
- Files for the Genome Design/Genome Analytics Short-course organized by the SBRG☆10Nov 30, 2021Updated 4 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- CarveMe: genome-scale metabolic model reconstruction☆216Sep 12, 2025Updated 10 months ago
- Kyoto Encylopedia of Genes and Genomes (KEGG) NetworkX Topological parser automates downloading, parsing, and converting from a KEGG Mark…☆12May 8, 2024Updated 2 years ago
- RetroPath2.0 to pathways☆18Jan 28, 2026Updated 6 months ago
- DeepMetabolism is a deep learning algorithm to predict phenotype from genome sequencing☆32Jun 9, 2017Updated 9 years ago
- The tRNA adaptation index☆21Apr 25, 2025Updated last year
- Python utilities for SBML☆41Updated this week
- The BiGG Models website server☆91Nov 7, 2019Updated 6 years ago
- An integrated visual environment for metabolic modeling methods such as FBA, FVA and Elementary Flux Modes, and advanced features such as…☆70Updated this week
- Genome-scale metabolic model of Methylococcus capsulatus.☆12Apr 12, 2019Updated 7 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Mackinac: A bridge between ModelSEED and COBRApy☆19Aug 20, 2018Updated 7 years ago
- Encoding Dynamic Flux Balance Analysis in SBML☆13Sep 16, 2020Updated 5 years ago
- A flux balance analysis machine learning classifier for microbial GWAS☆14Jan 14, 2020Updated 6 years ago
- New version☆34Dec 12, 2016Updated 9 years ago
- Toolkit for Modelling and Simulation of Gene Expressions and Metabolism☆13Apr 1, 2026Updated 4 months ago
- ChiBio primary operating system.☆27Feb 10, 2026Updated 6 months ago
- ☆14Dec 10, 2018Updated 7 years ago
- SWIG-Python wrappers implementing SBOL 2.2☆25Jan 20, 2022Updated 4 years ago
- The COnstraint-Based Reconstruction and Analysis Toolbox. Documentation:☆286Jul 28, 2026Updated 2 weeks ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆13Jul 25, 2017Updated 9 years ago
- optlang - sympy based mathematical programming language☆271Jun 2, 2026Updated 2 months ago
- The official PySCeS project source code repository.☆41Mar 20, 2026Updated 4 months ago
- ☆15May 8, 2026Updated 3 months ago
- DNA plotting library for Python☆302Mar 20, 2024Updated 2 years ago
- Causal and probabilistic reasoning with continuous time dynamical systems☆21Aug 29, 2025Updated 11 months ago
- The RAVEN Toolbox for genome scale model reconstruction, curation and analysis.☆131Jul 18, 2026Updated 3 weeks ago