SBRG / cobrameLinks
A COBRApy extension for genome-scale models of metabolism and expression (ME-models)
☆35Updated 6 years ago
Alternatives and similar repositories for cobrame
Users that are interested in cobrame are comparing it to the libraries listed below
Sorting:
- Repository of tutorials for The COBRA Toolbox☆23Updated 3 weeks ago
- D3.js based visualizations of cobrapy metabolic models☆47Updated 5 years ago
- The BiGG Models website server☆83Updated 5 years ago
- cameo - computer aided metabolic engineering & optimization☆118Updated 2 years ago
- Enzyme-constrained genome-scale models in python☆28Updated last year
- ☆22Updated 5 years ago
- Simple cloning simulator (Golden Gate etc.) for single and combinatorial assemblies☆62Updated 4 months ago
- Generate biomass objective function stoichiometric coefficients for genome-scale models from experimental data☆27Updated 2 years ago
- StrainDesign is a python package for the computational design of metabolic networks and based on COBRApy☆43Updated 2 weeks ago
- Mackinac: A bridge between ModelSEED and COBRApy☆19Updated 7 years ago
- An integrated visual environment for metabolic modeling with common methods such as FBA, FVA and Elementary Flux Modes, and advanced feat…☆58Updated 2 weeks ago
- Encoding Dynamic Flux Balance Analysis in SBML☆12Updated 5 years ago
- Metabolic Engineering Workbench☆40Updated last year
- A Python framework for structural systems biology☆109Updated 4 years ago
- framed: a metabolic modeling package for python☆26Updated 5 years ago
- ☆25Updated 2 years ago
- memote – the genome-scale metabolic model test suite☆140Updated last month
- Toolbox for including enzyme constraints on a genome-scale model.☆78Updated this week
- A route planner for DNA assembly☆36Updated 4 months ago
- This repository contains the definitive copy of the biochemistry and metadata used to construct models using the ModelSEED/ProbAnno appro…☆62Updated 7 months ago
- Computation of Microbial Ecosystems in Time and Space☆25Updated last month
- ReFramed: metabolic modeling package☆60Updated this week
- Analysis of ensembles of metabolic network reconstructions☆21Updated 2 weeks ago
- CBMPy is a Python based platform for constraint based modelling and analysis.☆19Updated last year
- Release of the whole cell E. coli model.☆68Updated 9 months ago
- Enumerating biosynthetic pathways in metabolic networks☆12Updated 7 months ago
- 🎨 Python library to plot multi-part genetic constructs☆25Updated 5 months ago
- ModelPolisher accesses the BiGG Models knowledgebase to annotate SBML models.☆23Updated 7 months ago
- Python package for building and analyzing models using ModelSEED☆23Updated 5 months ago
- The consensus GEM for Saccharomyces cerevisiae☆112Updated last week