Alternatives and similar repositories for driven:

Users that are interested in driven are comparing it to the libraries listed below

• SBRG / cobrame
  A COBRApy extension for genome-scale models of metabolism and expression (ME-models)
  ☆36Updated 6 years ago
• cdanielmachado / framed
  framed: a metabolic modeling package for python
  ☆26Updated 5 years ago
• matthiaskoenig / dfba
  Encoding Dynamic Flux Balance Analysis in SBML
  ☆11Updated 4 years ago
• opencobra / MASS-Toolbox
  Mass Action Stoichiometric Simulation (MASS) Toolbox
  ☆11Updated 7 years ago
• opencobra / COBRA.tutorials
  Repository of tutorials for The COBRA Toolbox
  ☆22Updated last week
• mmundy42 / mackinac
  Mackinac: A bridge between ModelSEED and COBRApy
  ☆19Updated 6 years ago
• Edinburgh-Genome-Foundry / SBOL-Visual-CSS
  Draw genetic elements with HTML & CSS
  ☆16Updated 8 years ago
• zhanglab / psamm
  Curation and analysis of metabolic models
  ☆34Updated last year
• opencobra / COBRA.jl
  High-level, high-performance, constraint-based reconstruction and analysis in Julia
  ☆62Updated 2 years ago
• latendre / PythonCyc
  ☆22Updated 4 years ago
• ginkgobioworks / geckopy
  Enzyme-constrained genome-scale models in python
  ☆28Updated last year
• segrelab / comets
  Computation of Microbial Ecosystems in Time and Space
  ☆24Updated last week
• jclachance / BOFdat
  Generate biomass objective function stoichiometric coefficients for genome-scale models from experimental data
  ☆27Updated last year
• opencobra / Medusa
  Analysis of ensembles of metabolic network reconstructions
  ☆21Updated 2 years ago
• Toepfer-Lab / cobramod
  CobraMod is a Python 3 open-source package which enables modifying and extending genome-scale metabolic models with metabolic pathway inf…
  ☆14Updated last week
• draeger-lab / ModelPolisher
  ModelPolisher accesses the BiGG Models knowledgebase to annotate SBML models.
  ☆23Updated 3 months ago
• cdanielmachado / reframed
  ReFramed: metabolic modeling package
  ☆58Updated last week
• cnapy-org / CNApy
  An integrated visual environment for metabolic modeling with common methods such as FBA, FVA and Elementary Flux Modes, and advanced feat…
  ☆54Updated 2 months ago
• SBRG / bigg_models
  The BiGG Models website server
  ☆81Updated 5 years ago
• eladnoor / component-contribution
  Standard reaction Gibbs energy estimation for biochemical reactions
  ☆17Updated 6 years ago
• pstjohn / d3flux
  D3.js based visualizations of cobrapy metabolic models
  ☆45Updated 5 years ago
• SBRG / cobradb
  COBRAdb loads genome-scale metabolic models and genome annotations into a relational database. It already powers BiGG Models, and it is a…
  ☆20Updated 5 years ago
• MetabolicAtlas / standard-GEM
  The standard for open-source GEMs on GitHub
  ☆19Updated last year
• kbase / kb_sdk
  Build and test new apps for the KBase platform
  ☆28Updated 2 months ago
• lanl / PyBNF
  An application for parameterization of biological models available in SBML and BNGL formats. Features include parallelization, metaheuris…
  ☆24Updated last year
• biosustain / croissance
  Tool for estimating growth rates from microbial growth curves
  ☆29Updated 3 years ago
• DD-DeCaF / tutorials
  Teaching materials for cobrapy, cameo, escher and DD-DeCaF
  ☆23Updated 2 years ago
• biosustain / cameo
  cameo - computer aided metabolic engineering & optimization
  ☆115Updated 2 years ago
• ananswam / bioscrape
  bioscrape (Bio-circuit Stochastic Single-cell Reaction Analysis and Parameter Estimation)
  ☆17Updated 4 years ago
• jdbrunner / surfin_fba
  Dynamic FBA for use with COBRApy metabolic models
  ☆10Updated last year