opencobra / driven
Data-Driven Constraint-based analysis
☆12Updated last year
Related projects: ⓘ
- A COBRApy extension for genome-scale models of metabolism and expression (ME-models)☆33Updated 5 years ago
- Repository of tutorials for The COBRA Toolbox☆18Updated this week
- Mackinac: A bridge between ModelSEED and COBRApy☆16Updated 6 years ago
- Curation and analysis of metabolic models☆34Updated last year
- framed: a metabolic modeling package for python☆26Updated 4 years ago
- Encoding Dynamic Flux Balance Analysis in SBML☆11Updated 4 years ago
- Computation of Microbial Ecosystems in Time and Space☆19Updated this week
- An application for parameterization of biological models available in SBML and BNGL formats. Features include parallelization, metaheuris…☆22Updated 9 months ago
- Mass Action Stoichiometric Simulation (MASS) Toolbox☆11Updated 7 years ago
- Standalone Python package containing libSBML with support for SBML Level 3 Core and accepted SBML Level 3 packages.☆21Updated last month
- Enzyme-constrained genome-scale models in python☆25Updated 10 months ago
- COBRAdb loads genome-scale metabolic models and genome annotations into a relational database. It already powers BiGG Models, and it is a…☆20Updated 4 years ago
- High-level, high-performance, constraint-based reconstruction and analysis in Julia☆60Updated last year
- Analysis of ensembles of metabolic network reconstructions☆19Updated last year
- ☆22Updated 4 years ago
- Build and test new apps for the KBase platform☆26Updated 4 months ago
- ModelPolisher accesses the BiGG Models knowledgebase to annotate SBML models.☆23Updated this week
- D3.js based visualizations of cobrapy metabolic models☆37Updated 4 years ago
- Dynamic FBA for use with COBRApy metabolic models☆10Updated 11 months ago
- CobraMod is a Python 3 open-source package which enables modifying and extending genome-scale metabolic models with metabolic pathway inf…☆12Updated last month
- Draw genetic elements with HTML & CSS☆15Updated 7 years ago
- Generate biomass objective function stoichiometric coefficients for genome-scale models from experimental data☆26Updated last year
- cameo - computer aided metabolic engineering & optimization☆113Updated last year
- ReFramed: metabolic modeling package☆53Updated last month
- This repository contains the definitive copy of the biochemistry and metadata used to construct models using the ModelSEED/ProbAnno appro…☆53Updated this week
- The BiGG Models website server☆78Updated 4 years ago
- Standard reaction Gibbs energy estimation for biochemical reactions☆17Updated 5 years ago
- An integrated visual environment for metabolic modeling with common methods such as FBA, FVA and Elementary Flux Modes, and advanced feat…☆44Updated 3 weeks ago
- Coral, a library and framework for specifying synthetic biology design processes.☆33Updated last year
- The Model SEED is a tool for building, curating, and analyzing gonome-scale metabolic models. Visit the Model SEED homepage for installat…☆19Updated 11 years ago