opencobra / drivenLinks
Data-Driven Constraint-based analysis
☆12Updated 2 years ago
Alternatives and similar repositories for driven
Users that are interested in driven are comparing it to the libraries listed below
Sorting:
- Mass Action Stoichiometric Simulation (MASS) Toolbox☆11Updated 7 years ago
- Mackinac: A bridge between ModelSEED and COBRApy☆19Updated 6 years ago
- A COBRApy extension for genome-scale models of metabolism and expression (ME-models)☆35Updated 6 years ago
- cameo - computer aided metabolic engineering & optimization☆117Updated 2 years ago
- framed: a metabolic modeling package for python☆26Updated 5 years ago
- Curation and analysis of metabolic models☆35Updated last year
- Encoding Dynamic Flux Balance Analysis in SBML☆12Updated 4 years ago
- Repository of tutorials for The COBRA Toolbox☆22Updated 3 weeks ago
- The BiGG Models website server☆83Updated 5 years ago
- Computation of Microbial Ecosystems in Time and Space☆24Updated last month
- COBRAdb loads genome-scale metabolic models and genome annotations into a relational database. It already powers BiGG Models, and it is a…☆20Updated 5 years ago
- D3.js based visualizations of cobrapy metabolic models☆45Updated 5 years ago
- Python Environment for Modeling and Simulating Biological Systems☆119Updated last week
- An application for parameterization of biological models available in SBML and BNGL formats. Features include parallelization, metaheuris…☆24Updated last week
- Python utilities for SBML☆41Updated last month
- Build and test new apps for the KBase platform☆28Updated 4 months ago
- Analysis of ensembles of metabolic network reconstructions☆21Updated 2 years ago
- Standard reaction Gibbs energy estimation for biochemical reactions☆17Updated 6 years ago
- ☆22Updated 4 years ago
- ModelPolisher accesses the BiGG Models knowledgebase to annotate SBML models.☆23Updated 5 months ago
- An integrated visual environment for metabolic modeling with common methods such as FBA, FVA and Elementary Flux Modes, and advanced feat…☆56Updated 4 months ago
- memote – the genome-scale metabolic model test suite☆133Updated last year
- Python library for primer-based verification of DNA assemblies: primer selection, data analyis, etc.☆33Updated 3 months ago
- Python framework for Systems Biology modeling☆182Updated 4 months ago
- C++ implementation of SBOL 2.3.2☆16Updated 4 years ago
- ReFramed: metabolic modeling package☆59Updated 2 months ago
- Read DNA sequences from colourful Microsoft Word documents☆32Updated 2 months ago
- Draw genetic elements with HTML & CSS☆16Updated 8 years ago
- Enzyme-constrained genome-scale models in python☆28Updated last year
- PyCogent: Official repository for software and unit tests☆91Updated 4 years ago