EPFL-LCSB / pytfaLinks
A Python 3 implementation of Thermodynamics-based Flux Analysis
☆42Updated 3 months ago
Alternatives and similar repositories for pytfa
Users that are interested in pytfa are comparing it to the libraries listed below
Sorting:
- Enzyme models that take into account kinetics, allostery and thermodynamics☆27Updated last year
- StrainDesign is a python package for the computational design of metabolic networks and based on COBRApy☆46Updated last month
- Enzyme-constrained genome-scale models in python☆28Updated 2 years ago
- Toolbox for including enzyme constraints on a genome-scale model.☆78Updated this week
- D3.js based visualizations of cobrapy metabolic models☆47Updated 5 years ago
- Generate biomass objective function stoichiometric coefficients for genome-scale models from experimental data☆27Updated 2 years ago
- cameo - computer aided metabolic engineering & optimization☆120Updated 2 years ago
- The BiGG Models website server☆84Updated 5 years ago
- A python toolbox for 13C metabolic flux analysis☆23Updated 3 months ago
- An integrated visual environment for metabolic modeling with common methods such as FBA, FVA and Elementary Flux Modes, and advanced feat…☆58Updated last week
- Symbolic Kinetic Models with Python☆32Updated 4 months ago
- ETFL: A formulation for flux balance models accounting for expression, thermodynamics, and resource allocation constraints☆16Updated 3 months ago
- memote – the genome-scale metabolic model test suite☆142Updated 2 months ago
- The consensus GEM for Saccharomyces cerevisiae☆113Updated 2 weeks ago
- This repository contains the definitive copy of the biochemistry and metadata used to construct models using the ModelSEED/ProbAnno appro…☆62Updated 8 months ago
- A COBRApy extension for genome-scale models of metabolism and expression (ME-models)☆35Updated 6 years ago
- A Python framework for structural systems biology☆109Updated 4 years ago
- Retrieves kcat data and adds protein allocation constraints to stoichiometric metabolic models according to the sMOMENT method☆15Updated 8 months ago
- Metabolic Engineering Workbench☆40Updated last year
- framed: a metabolic modeling package for python☆26Updated 5 years ago
- Python package for creating, calibrating and simulating RBA models☆12Updated 2 years ago
- BRENDA parser in python☆22Updated 3 years ago
- Visualise RNA secondary structure in consistent, reproducible and recognisable layouts☆75Updated 3 months ago
- teemi: A Python package for reproducible and FAIR microbial strain construction. Simulate the entire dbtl-cycle, generate genetic parts, …☆41Updated last week
- MSA(Multiple Sequence Alignment) visualization python package for sequence analysis☆156Updated 10 months ago
- Dynamic FBA for use with COBRApy metabolic models☆10Updated 2 years ago
- ReFramed: metabolic modeling package☆61Updated last month
- Python interface for running COMETS simulations and analyzing the results☆14Updated 2 weeks ago
- Analysis of ensembles of metabolic network reconstructions☆21Updated last month
- Standard reaction Gibbs energy estimation for biochemical reactions☆19Updated 6 years ago