Alternatives and similar repositories for Human-GEM

Users that are interested in Human-GEM are comparing it to the libraries listed below

• SysBioChalmers / RAVEN
  The RAVEN Toolbox for genome scale model reconstruction, curation and analysis.
  ☆121Updated 3 weeks ago
• SysBioChalmers / GECKO
  Toolbox for including enzyme constraints on a genome-scale model.
  ☆79Updated last week
• jclachance / BOFdat
  Generate biomass objective function stoichiometric coefficients for genome-scale models from experimental data
  ☆27Updated 2 years ago
• SysBioChalmers / yeast-GEM
  The consensus GEM for Saccharomyces cerevisiae
  ☆115Updated 2 months ago
• opencobra / memote
  memote – the genome-scale metabolic model test suite
  ☆144Updated 5 months ago
• gecrooks / weblogo
  WebLogo 3: Sequence Logos redrawn
  ☆154Updated last week
• bionumpy / bionumpy
  Python library for array programming on biological datasets. Documentation available at: https://bionumpy.github.io/bionumpy/
  ☆291Updated 7 months ago
• BioSystemsUM / troppo
  Reconstruction algorithms for Python
  ☆26Updated last year
• saezlab / pypath
  Python module for prior knowledge integration. Builds databases of signaling pathways, enzyme-substrate interactions, complexes, annotat…
  ☆157Updated last week
• cdanielmachado / reframed
  ReFramed: metabolic modeling package
  ☆63Updated 4 months ago
• SBRG / bigg_models
  The BiGG Models website server
  ☆88Updated 6 years ago
• MetabolicAtlas / MetabolicAtlas
  Open source genome-scale metabolic models of human and model animals
  ☆25Updated 2 weeks ago
• pydna-group / pydna
  Clone with Python! Data structures for double stranded DNA & simulation of homologous recombination, Gibson assembly, cut & paste cloning…
  ☆215Updated last week
• CovertLab / WholeCellEcoliRelease
  Release of the whole cell E. coli model.
  ☆76Updated last year
• cokelaer / bioservices
  Access to Biological Web Services from Python.
  ☆326Updated last month
• opencobra / cobratoolbox
  The COnstraint-Based Reconstruction and Analysis Toolbox. Documentation:
  ☆278Updated this week
• Nesvilab / FragPipe
  A cross-platform proteomics data analysis suite
  ☆276Updated this week
• antigenomics / vdjdb-db
  🗂️ [vdjdb.com is up and running!] Git-based TCR database storage & management. Submissions welcome!
  ☆150Updated this week
• pstjohn / d3flux
  D3.js based visualizations of cobrapy metabolic models
  ☆50Updated 5 years ago
• biosustain / cameo
  cameo - computer aided metabolic engineering & optimization
  ☆124Updated 3 years ago
• klamt-lab / straindesign
  StrainDesign is a python package for the computational design of metabolic networks and based on COBRApy
  ☆48Updated last month
• churchmanlab / genewalk
  GeneWalk identifies relevant gene functions for a biological context using network representation learning
  ☆133Updated last year
• jbkinney / logomaker
  Software for the visualization of sequence-function relationships
  ☆207Updated last month
• nf-core / proteinfold
  Protein 3D structure prediction pipeline
  ☆97Updated this week
• SysBioInra / RBApy
  Python package for creating, calibrating and simulating RBA models
  ☆13Updated 2 years ago
• ModelSEED / ModelSEEDpy
  Python package for building and analyzing models using ModelSEED
  ☆25Updated 9 months ago
• ebi-webcomponents / nightingale
  Data visualisation web components for the life sciences.
  ☆143Updated 3 weeks ago
• Nesvilab / philosopher
  PeptideProphet, PTMProphet, ProteinProphet, iProphet, Abacus, and FDR filtering
  ☆124Updated 2 months ago
• SBRG / ssbio
  A Python framework for structural systems biology
  ☆109Updated 5 years ago
• bigbio / proteomics-sample-metadata
  The Proteomics sample metadata: Standard for experimental design annotation in proteomics datasets
  ☆101Updated this week