Alternatives and similar repositories for Human-GEM:

Users that are interested in Human-GEM are comparing it to the libraries listed below

• SysBioChalmers / RAVEN
  The RAVEN Toolbox for genome scale model reconstruction, curation and analysis.
  ☆107Updated last month
• SysBioChalmers / GECKO
  Toolbox for including enzyme constraints on a genome-scale model.
  ☆70Updated 5 months ago
• SysBioChalmers / yeast-GEM
  The consensus GEM for Saccharomyces cerevisiae
  ☆101Updated 3 months ago
• jclachance / BOFdat
  Generate biomass objective function stoichiometric coefficients for genome-scale models from experimental data
  ☆27Updated last year
• SBRG / bigg_models
  The BiGG Models website server
  ☆81Updated 5 years ago
• opencobra / memote
  memote – the genome-scale metabolic model test suite
  ☆131Updated last year
• BioSystemsUM / troppo
  Reconstruction algorithms for Python
  ☆24Updated 4 months ago
• klamt-lab / straindesign
  StrainDesign is a python package for the computational design of metabolic networks and based on COBRApy
  ☆41Updated 2 weeks ago
• fumiomatsuda / mfapy
  A python toolbox for 13C metabolic flux analysis
  ☆20Updated 6 months ago
• MetabolicAtlas / MetabolicAtlas
  Open source genome-scale metabolic models of human and model animals
  ☆21Updated last month
• cdanielmachado / reframed
  ReFramed: metabolic modeling package
  ☆58Updated 7 months ago
• saezlab / pypath
  Python module for prior knowledge integration. Builds databases of signaling pathways, enzyme-substrate interactions, complexes, annotat…
  ☆138Updated this week
• antigenomics / vdjdb-db
  🗂️ [vdjdb.cdr3.net is up and running] Git-based TCR database storage & management. Submissions welcome!
  ☆134Updated last week
• SBRG / ssbio
  A Python framework for structural systems biology
  ☆107Updated 4 years ago
• SBRG / cobrame
  A COBRApy extension for genome-scale models of metabolism and expression (ME-models)
  ☆36Updated 6 years ago
• gecrooks / weblogo
  WebLogo 3: Sequence Logos redrawn
  ☆149Updated 2 months ago
• franciscozorrilla / metaGEM
  An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within micro…
  ☆229Updated 7 months ago
• churchmanlab / genewalk
  GeneWalk identifies relevant gene functions for a biological context using network representation learning
  ☆130Updated 7 months ago
• jotech / gapseq
  Informed prediction and analysis of bacterial metabolic pathways and genome-scale networks
  ☆174Updated this week
• bionumpy / bionumpy
  Python library for array programming on biological datasets. Documentation available at: https://bionumpy.github.io/bionumpy/
  ☆280Updated this week
• nf-core / proteinfold
  Protein 3D structure prediction pipeline
  ☆73Updated last week
• BioSystemsUM / MEWpy
  Metabolic Engineering Workbench
  ☆39Updated 9 months ago
• cdanielmachado / carveme
  CarveMe: genome-scale metabolic model reconstruction
  ☆165Updated 6 months ago
• ModelSEED / ModelSEEDpy
  Python package for building and analyzing models using ModelSEED
  ☆22Updated 2 weeks ago
• biosustain / cameo
  cameo - computer aided metabolic engineering & optimization
  ☆115Updated 2 years ago
• SystemsBioinformatics / cbmpy
  CBMPy is a Python based platform for constraint based modelling and analysis.
  ☆19Updated 10 months ago
• rcedgar / muscle
  Multiple sequence and structure alignment with top benchmark scores scalable to thousands of sequences. Generates replicate alignments, e…
  ☆235Updated 3 months ago
• Lattice-Automation / seqfold
  nucleic acid folding
  ☆90Updated 7 months ago
• jbkinney / logomaker
  Software for the visualization of sequence-function relationships
  ☆195Updated this week
• ebi-pf-team / interproscan
  Genome-scale protein function classification
  ☆316Updated this week