The generic genome-scale metabolic model of Homo sapiens
☆162Mar 30, 2026Updated 2 months ago
Alternatives and similar repositories for Human-GEM
Users that are interested in Human-GEM are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- The RAVEN Toolbox for genome scale model reconstruction, curation and analysis.☆128Updated this week
- Open source genome-scale metabolic models of human and model animals☆27May 5, 2026Updated last month
- Reconstruction algorithms for Python☆26Oct 23, 2024Updated last year
- COBRApy is a package for constraint-based modeling of metabolic networks.☆567Updated this week
- The consensus GEM for Saccharomyces cerevisiae☆127Jun 4, 2026Updated last week
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Generate biomass objective function stoichiometric coefficients for genome-scale models from experimental data☆27Jul 6, 2023Updated 2 years ago
- The COnstraint-Based Reconstruction and Analysis Toolbox. Documentation:☆282May 29, 2026Updated last week
- The standard for open-source GEMs on GitHub☆22Oct 26, 2023Updated 2 years ago
- An integrated visual environment for metabolic modeling methods such as FBA, FVA and Elementary Flux Modes, and advanced features such as…☆66May 28, 2026Updated 2 weeks ago
- ReFramed: metabolic modeling package☆64May 4, 2026Updated last month
- Efficient random sampling for COBRA models☆14Oct 14, 2021Updated 4 years ago
- Mackinac: A bridge between ModelSEED and COBRApy☆19Aug 20, 2018Updated 7 years ago
- A 3-Dimensional View of Human Metabolism and Disease☆32Feb 28, 2018Updated 8 years ago
- Python interface for running COMETS simulations and analyzing the results☆16May 19, 2026Updated 3 weeks ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Retrieves kcat data and adds protein allocation constraints to stoichiometric metabolic models according to the sMOMENT method. Also chec…☆17Feb 28, 2025Updated last year
- MOCCASIN translates basic ODE-based MATLAB models of biological processes into SBML format.☆13Aug 21, 2024Updated last year
- memote – the genome-scale metabolic model test suite☆146Aug 14, 2025Updated 9 months ago
- Python package for building and analyzing models using ModelSEED☆28Feb 11, 2026Updated 4 months ago
- Data-Driven Constraint-based analysis☆12Nov 4, 2022Updated 3 years ago
- A Universal Modeling Language for Metabolic Flux Analysis☆12Mar 6, 2025Updated last year
- A Python 3 implementation of Thermodynamics-based Flux Analysis☆46Jul 9, 2025Updated 11 months ago
- Mass Action Stoichiometric Simulation (MASS) Toolbox☆12Aug 1, 2017Updated 8 years ago
- An alternative approach to capture the breadth of cellular functions by performing a functional analysis of existing biological networks.☆15Oct 19, 2022Updated 3 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ModelPolisher accesses the BiGG Models knowledgebase to annotate SBML models.☆24Jan 28, 2025Updated last year
- CarveMe: genome-scale metabolic model reconstruction☆207Sep 12, 2025Updated 8 months ago
- D3.js based visualizations of cobrapy metabolic models☆51Mar 10, 2020Updated 6 years ago
- PyBoolNet is a Python package for the generation, modification and analysis of Boolean networks.☆54Mar 3, 2026Updated 3 months ago
- ☆10Jul 4, 2019Updated 6 years ago
- Pipeline for the generation and simulation of personalized Flux Balance Analysis models☆11Feb 14, 2021Updated 5 years ago
- single cell Flux Estimation Analysis (scFEA) Try the below web server!☆155Nov 10, 2023Updated 2 years ago
- CobraMod is a Python 3 open-source package which enables modifying and extending genome-scale metabolic models with metabolic pathway inf…☆18May 11, 2026Updated last month
- Source code of the Bgee pipeline used to build the Bgee database☆12Jun 2, 2026Updated last week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆89Jun 29, 2024Updated last year
- The code and distributable for designing minimal microbial communities with specified metabolic functions.☆11Aug 9, 2017Updated 8 years ago
- Reaction Inclusion by Parsimony and Transcript Distribution☆13Feb 14, 2023Updated 3 years ago
- The BiGG Models website server☆90Nov 7, 2019Updated 6 years ago
- ☆61Mar 23, 2026Updated 2 months ago
- Workshop in omics integration and systems biology☆88Nov 25, 2024Updated last year
- Analysis of ensembles of metabolic network reconstructions☆22May 20, 2026Updated 3 weeks ago