The generic genome-scale metabolic model of Homo sapiens
☆127Feb 6, 2026Updated 3 weeks ago
Alternatives and similar repositories for Human-GEM
Users that are interested in Human-GEM are comparing it to the libraries listed below
Sorting:
- The RAVEN Toolbox for genome scale model reconstruction, curation and analysis.☆121Updated this week
- Reconstruction algorithms for Python☆26Oct 23, 2024Updated last year
- Open source genome-scale metabolic models of human and model animals☆25Feb 11, 2026Updated 2 weeks ago
- The consensus GEM for Saccharomyces cerevisiae☆115Updated this week
- COBRApy is a package for constraint-based modeling of metabolic networks.☆546Dec 4, 2025Updated 2 months ago
- Generate biomass objective function stoichiometric coefficients for genome-scale models from experimental data☆27Jul 6, 2023Updated 2 years ago
- ReFramed: metabolic modeling package☆63Sep 16, 2025Updated 5 months ago
- A 3-Dimensional View of Human Metabolism and Disease☆32Feb 28, 2018Updated 8 years ago
- The COnstraint-Based Reconstruction and Analysis Toolbox. Documentation:☆279Feb 10, 2026Updated 2 weeks ago
- Mackinac: A bridge between ModelSEED and COBRApy☆19Aug 20, 2018Updated 7 years ago
- MOCCASIN translates basic ODE-based MATLAB models of biological processes into SBML format.☆12Aug 21, 2024Updated last year
- The standard for open-source GEMs on GitHub☆21Oct 26, 2023Updated 2 years ago
- An integrated visual environment for metabolic modeling methods such as FBA, FVA and Elementary Flux Modes, and advanced features such as…☆62Dec 22, 2025Updated 2 months ago
- memote – the genome-scale metabolic model test suite☆145Aug 14, 2025Updated 6 months ago
- Python interface for running COMETS simulations and analyzing the results☆15Updated this week
- Toolbox for including enzyme constraints on a genome-scale model.☆81Feb 22, 2026Updated last week
- Efficient random sampling for COBRA models☆14Oct 14, 2021Updated 4 years ago
- Pipeline for the generation and simulation of personalized Flux Balance Analysis models☆11Feb 14, 2021Updated 5 years ago
- Data-Driven Constraint-based analysis☆12Nov 4, 2022Updated 3 years ago
- An alternative approach to capture the breadth of cellular functions by performing a functional analysis of existing biological networks.☆15Oct 19, 2022Updated 3 years ago
- Mass Action Stoichiometric Simulation (MASS) Toolbox☆12Aug 1, 2017Updated 8 years ago
- Python package for building and analyzing models using ModelSEED☆25Feb 11, 2026Updated 2 weeks ago
- A Universal Modeling Language for Metabolic Flux Analysis☆13Mar 6, 2025Updated 11 months ago
- ☆10Jul 4, 2019Updated 6 years ago
- Retrieves kcat data and adds protein allocation constraints to stoichiometric metabolic models according to the sMOMENT method. Also chec…☆17Feb 28, 2025Updated last year
- A Python 3 implementation of Thermodynamics-based Flux Analysis☆43Jul 9, 2025Updated 7 months ago
- ModelPolisher accesses the BiGG Models knowledgebase to annotate SBML models.☆23Jan 28, 2025Updated last year
- Deep learning and Bayesian approach applied to enzyme turnover number for the improvement of enzyme-constrained genome-scale metabolic mo…☆184Jul 4, 2023Updated 2 years ago
- D3.js based visualizations of cobrapy metabolic models☆50Mar 10, 2020Updated 5 years ago
- CarveMe: genome-scale metabolic model reconstruction☆198Sep 12, 2025Updated 5 months ago
- Python Environment for Modeling and Simulating Biological Systems☆133Dec 5, 2025Updated 2 months ago
- CobraMod is a Python 3 open-source package which enables modifying and extending genome-scale metabolic models with metabolic pathway inf…☆16Updated this week
- single cell Flux Estimation Analysis (scFEA) Try the below web server!☆143Nov 10, 2023Updated 2 years ago
- PyBoolNet is a Python package for the generation, modification and analysis of Boolean networks.☆54Jan 8, 2026Updated last month
- ☆19Feb 19, 2026Updated last week
- COPASI is a software application for simulation and analysis of biochemical networks and their dynamics.☆124Updated this week
- The BiGG Models website server☆88Nov 7, 2019Updated 6 years ago
- The SBML Test Suite is a conformance testing system. It allows developers and users to test the degree and correctness of the SBML suppor…☆26Dec 3, 2025Updated 2 months ago
- Analysis of ensembles of metabolic network reconstructions☆21Feb 9, 2026Updated 2 weeks ago