Alternatives and similar repositories for Human-GEM

Users that are interested in Human-GEM are comparing it to the libraries listed below

• SysBioChalmers / RAVEN
  The RAVEN Toolbox for genome scale model reconstruction, curation and analysis.
  ☆119Updated 3 weeks ago
• opencobra / memote
  memote – the genome-scale metabolic model test suite
  ☆143Updated 3 months ago
• SysBioChalmers / GECKO
  Toolbox for including enzyme constraints on a genome-scale model.
  ☆79Updated 2 weeks ago
• jclachance / BOFdat
  Generate biomass objective function stoichiometric coefficients for genome-scale models from experimental data
  ☆27Updated 2 years ago
• SysBioChalmers / yeast-GEM
  The consensus GEM for Saccharomyces cerevisiae
  ☆114Updated last week
• SBRG / bigg_models
  The BiGG Models website server
  ☆85Updated 6 years ago
• bionumpy / bionumpy
  Python library for array programming on biological datasets. Documentation available at: https://bionumpy.github.io/bionumpy/
  ☆289Updated 5 months ago
• gecrooks / weblogo
  WebLogo 3: Sequence Logos redrawn
  ☆152Updated 7 months ago
• cdanielmachado / reframed
  ReFramed: metabolic modeling package
  ☆62Updated 2 months ago
• CovertLab / WholeCellEcoliRelease
  Release of the whole cell E. coli model.
  ☆73Updated last year
• BioSystemsUM / troppo
  Reconstruction algorithms for Python
  ☆26Updated last year
• biosustain / cameo
  cameo - computer aided metabolic engineering & optimization
  ☆122Updated 3 years ago
• cokelaer / bioservices
  Access to Biological Web Services from Python.
  ☆323Updated last week
• opencobra / cobratoolbox
  The COnstraint-Based Reconstruction and Analysis Toolbox. Documentation:
  ☆270Updated last week
• pstjohn / d3flux
  D3.js based visualizations of cobrapy metabolic models
  ☆49Updated 5 years ago
• churchmanlab / genewalk
  GeneWalk identifies relevant gene functions for a biological context using network representation learning
  ☆133Updated last year
• saezlab / pypath
  Python module for prior knowledge integration. Builds databases of signaling pathways, enzyme-substrate interactions, complexes, annotat…
  ☆154Updated last week
• pydna-group / pydna
  Clone with Python! Data structures for double stranded DNA & simulation of homologous recombination, Gibson assembly, cut & paste cloning…
  ☆209Updated this week
• SBRG / ssbio
  A Python framework for structural systems biology
  ☆110Updated 5 years ago
• Nesvilab / FragPipe
  A cross-platform proteomics data analysis suite
  ☆266Updated this week
• SysBioInra / RBApy
  Python package for creating, calibrating and simulating RBA models
  ☆13Updated 2 years ago
• MetabolicAtlas / MetabolicAtlas
  Open source genome-scale metabolic models of human and model animals
  ☆25Updated 3 weeks ago
• klamt-lab / straindesign
  StrainDesign is a python package for the computational design of metabolic networks and based on COBRApy
  ☆46Updated last month
• antigenomics / vdjdb-db
  🗂️ [vdjdb.cdr3.net server will undergo maintenance this December, web site may be unreachable!] Git-based TCR database storage & managem…
  ☆147Updated last month
• jbkinney / logomaker
  Software for the visualization of sequence-function relationships
  ☆206Updated 6 months ago
• ViennaRNA / ViennaRNA
  The ViennaRNA Package
  ☆374Updated this week
• Lattice-Automation / seqfold
  nucleic acid folding
  ☆108Updated 3 months ago
• primer3-org / primer3
  Primer3 is a command line tool to select primers for polymerase chain reaction (PCR).
  ☆272Updated 6 months ago
• fumiomatsuda / mfapy
  A python toolbox for 13C metabolic flux analysis
  ☆23Updated 5 months ago
• jdbrunner / surfin_fba
  Dynamic FBA for use with COBRApy metabolic models
  ☆10Updated 2 years ago