☆27Dec 9, 2022Updated 3 years ago
Alternatives and similar repositories for MASSpy
Users that are interested in MASSpy are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Enzyme-constrained genome-scale models in python☆38Oct 25, 2023Updated 2 years ago
- The standard for open-source GEMs on GitHub☆22Updated this week
- Chimera: An easy to use pipeline for Genome based Metabolic Network reconstruction, evaluation and visualization.☆20Oct 21, 2022Updated 3 years ago
- Symbolic Kinetic Models with Python☆38Jun 4, 2025Updated last year
- cameo - computer aided metabolic engineering & optimization☆129Nov 7, 2022Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Python package for building and analyzing models using ModelSEED☆31Feb 11, 2026Updated 7 months ago
- A python implementation of flux balance analysis to model microbial metabolism☆28Feb 25, 2023Updated 3 years ago
- CellBox: Interpretable Machine Learning for Perturbation Biology☆56Jul 27, 2023Updated 3 years ago
- Variational Auto Encoders for learning binding signatures of transcription factors☆15Mar 14, 2024Updated 2 years ago
- Python framework for Systems Biology modeling☆200May 19, 2026Updated 4 months ago
- Python Environment for Modeling and Simulating Biological Systems☆146Aug 29, 2026Updated 3 weeks ago
- LibSBML is a native library for reading, writing and manipulating files and data streams containing the Systems Biology Markup Language (…☆57Updated this week
- BiGMeC - Biosynthetic Gene cluster Metabolic pathway Constructor☆17May 14, 2023Updated 3 years ago
- Rule-based modeling framework☆70Sep 14, 2026Updated last week
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Dynamic Flux Balance analysis in Python☆12Jan 22, 2016Updated 10 years ago
- An application for parameterization of biological models available in SBML and BNGL formats. Features include parallelization, metaheuris…☆25Updated this week
- Build-A-Cell protocol for making liposomes☆13Jan 30, 2024Updated 2 years ago
- Software tool for metabolic modelling in Systems Biology☆10Jul 24, 2026Updated last month
- Teaching materials for cobrapy, cameo, escher and DD-DeCaF☆28Jul 12, 2022Updated 4 years ago
- LikelihoodProfiler is a Julia package for practical identifiability analysis and confidence intervals estimation.☆38Aug 29, 2026Updated 3 weeks ago
- ☆11Dec 15, 2023Updated 2 years ago
- ☆17Feb 27, 2024Updated 2 years ago
- novoStoic2.0: Integrated Pathway Design Tool with Thermodynamic Considerations and Enzyme Selection☆11Apr 28, 2025Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Release of the whole cell E. coli model.☆78Dec 10, 2024Updated last year
- Bioscrape: Biological Modeling, Simulation, and Parameter Estimation☆30Sep 10, 2026Updated last week
- Target prediction☆14May 8, 2020Updated 6 years ago
- A 3-Dimensional View of Human Metabolism and Disease☆32Feb 28, 2018Updated 8 years ago
- An R package to call oomycete effectors☆11Aug 31, 2023Updated 3 years ago
- Quasilinear data representations for single-cell omics data analysis☆42May 4, 2023Updated 3 years ago
- libRoadRunner: A high-performance SBML simulator☆63Sep 5, 2026Updated 2 weeks ago
- The ProteoWizard Library and Tools are a set of modular and extensible open-source, cross-platform tools and software libraries that faci…☆22Aug 25, 2023Updated 3 years ago
- Inpainting protein sequence and structure☆13Nov 10, 2023Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- This project is a Graphical User Interface frontend for GlycoGenius, a python program that aims to be an all-in-one solution for data ana…☆17Jan 25, 2026Updated 7 months ago
- GPU-accelerated multicellular modelling framework☆75Sep 14, 2026Updated last week
- A Plasmid Editor☆17Jun 27, 2023Updated 3 years ago
- ☆17Aug 27, 2026Updated 3 weeks ago
- Standalone Python package containing libSBML with support for SBML Level 3 Core and accepted SBML Level 3 packages.☆24Updated this week
- Draw genetic elements with HTML & CSS☆19May 6, 2026Updated 4 months ago
- PubPeer Chrome browser extension☆15Feb 18, 2025Updated last year