☆27Dec 9, 2022Updated 3 years ago
Alternatives and similar repositories for MASSpy
Users that are interested in MASSpy are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A compact metabolic model of Escherichia Coli core and biosynthetic metabolism☆14Mar 17, 2026Updated 7 months ago
- novoStoic2.0: Integrated Pathway Design Tool with Thermodynamic Considerations and Enzyme Selection☆11Apr 28, 2025Updated last year
- Enzyme-constrained genome-scale models in python☆39Oct 25, 2023Updated 3 years ago
- The standard for open-source GEMs on GitHub☆22Oct 5, 2026Updated 3 weeks ago
- cameo - computer aided metabolic engineering & optimization☆129Nov 7, 2022Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Symbolic Kinetic Models with Python☆38Jun 4, 2025Updated last year
- memote – the genome-scale metabolic model test suite☆152Aug 14, 2025Updated last year
- A python implementation of flux balance analysis to model microbial metabolism☆28Feb 25, 2023Updated 3 years ago
- Chimera: An easy to use pipeline for Genome based Metabolic Network reconstruction, evaluation and visualization.☆20Oct 21, 2022Updated 4 years ago
- Analysis of ensembles of metabolic network reconstructions☆22Sep 3, 2026Updated last month
- COBRApy is a package for constraint-based modeling of metabolic networks.☆591Oct 12, 2026Updated 3 weeks ago
- Encoding Dynamic Flux Balance Analysis in SBML☆13Sep 16, 2020Updated 6 years ago
- ReFramed: metabolic modeling package☆63Jun 26, 2026Updated 4 months ago
- FLYCOP (FLexible sYnthetic Consortium OPtimization)☆12Sep 24, 2018Updated 8 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Jupyter widget for the dynamic and static visualizations of systems biology models written in PySB, BNGL, and SBML☆28Mar 13, 2023Updated 3 years ago
- Mass Action Stoichiometric Simulation (MASS) Toolbox☆13Aug 1, 2017Updated 9 years ago
- ☆20Jun 20, 2022Updated 4 years ago
- Python framework for Systems Biology modeling☆201May 19, 2026Updated 5 months ago
- Generating dynamic structures through physics-based sampling of trRosettaX2-predicted inter-residue geometries☆11Mar 17, 2026Updated 7 months ago
- ☆16Dec 20, 2024Updated last year
- Machine Learning models for in vitro enzyme kinetic parameter prediction☆98Jun 15, 2026Updated 4 months ago
- ☆15Nov 21, 2025Updated 11 months ago
- Teaching materials for cobrapy, cameo, escher and DD-DeCaF☆29Jul 12, 2022Updated 4 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Collection of genome-scale metabolic models, genomes, and scripts for At-LSPHERE bacterial culture collection☆10Jul 25, 2023Updated 3 years ago
- Rule-based modeling framework☆70Oct 19, 2026Updated last week
- A modular compiler for biological chemical reaction networks☆56Sep 27, 2026Updated last month
- CellBox: Interpretable Machine Learning for Perturbation Biology☆56Jul 27, 2023Updated 3 years ago
- Python Environment for Modeling and Simulating Biological Systems☆148Aug 29, 2026Updated 2 months ago
- ☆13Oct 1, 2025Updated last year
- A computational method for comparing cellular profiles with the flexibility to place a higher weight on functional features of interest.☆12Jan 31, 2023Updated 3 years ago
- DeepNovo workflow of neoantigen discovery by personalized de novo sequencing.☆12Nov 26, 2020Updated 5 years ago
- Automated synthetic microbial Community Design☆13Mar 26, 2021Updated 5 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Please use opencobra/escher for current Escher development. That repository is the preferred home for the latest community-maintained ver…☆236May 12, 2026Updated 5 months ago
- ChiBio primary operating system.☆27Feb 10, 2026Updated 8 months ago
- Standalone Python package containing libSBML with support for SBML Level 3 Core and accepted SBML Level 3 packages.☆24Sep 17, 2026Updated last month
- StochPy is a versatile stochastic modeling package which is designed for stochastic simulation of molecular control networks☆45Jun 20, 2025Updated last year
- A project to illustrate the power of Jax for simulating astrochemical kinetics.☆11Oct 12, 2026Updated 3 weeks ago
- Variational Auto Encoders for learning binding signatures of transcription factors☆15Mar 14, 2024Updated 2 years ago
- BiGMeC - Biosynthetic Gene cluster Metabolic pathway Constructor☆18May 14, 2023Updated 3 years ago