☆26Dec 9, 2022Updated 3 years ago
Alternatives and similar repositories for MASSpy
Users that are interested in MASSpy are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Enzyme-constrained genome-scale models in python☆38Oct 25, 2023Updated 2 years ago
- Chimera: An easy to use pipeline for Genome based Metabolic Network reconstruction, evaluation and visualization.☆18Oct 21, 2022Updated 3 years ago
- memote – the genome-scale metabolic model test suite☆146Aug 14, 2025Updated 9 months ago
- Symbolic Kinetic Models with Python☆36Jun 4, 2025Updated 11 months ago
- cameo - computer aided metabolic engineering & optimization☆124Nov 7, 2022Updated 3 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- ReFramed: metabolic modeling package☆63May 4, 2026Updated 2 weeks ago
- A python implementation of flux balance analysis to model microbial metabolism☆28Feb 25, 2023Updated 3 years ago
- Jupyter widget for the dynamic and static visualizations of systems biology models written in PySB, BNGL, and SBML☆28Mar 13, 2023Updated 3 years ago
- Python Environment for Modeling and Simulating Biological Systems☆141Apr 10, 2026Updated last month
- ☆16Feb 27, 2024Updated 2 years ago
- Automated synthetic microbial Community Design☆13Mar 26, 2021Updated 5 years ago
- A computational method for comparing cellular profiles with the flexibility to place a higher weight on functional features of interest.☆12Jan 31, 2023Updated 3 years ago
- DeepNovo workflow of neoantigen discovery by personalized de novo sequencing.☆12Nov 26, 2020Updated 5 years ago
- StochPy is a versatile stochastic modeling package which is designed for stochastic simulation of molecular control networks☆44Jun 20, 2025Updated 11 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Rule-based modeling framework☆68May 8, 2026Updated 2 weeks ago
- BiGMeC - Biosynthetic Gene cluster Metabolic pathway Constructor☆16May 14, 2023Updated 3 years ago
- State-of-the-art ab initio prediction of 1D protein structure annotations☆13Feb 28, 2021Updated 5 years ago
- An application for parameterization of biological models available in SBML and BNGL formats. Features include parallelization, metaheuris…☆24Updated this week
- ☆87Feb 11, 2026Updated 3 months ago
- ☆17Jun 27, 2024Updated last year
- Build-A-Cell protocol for making liposomes☆13Jan 30, 2024Updated 2 years ago
- Software tool for metabolic modelling in Systems Biology☆10Dec 30, 2020Updated 5 years ago
- ☆10Dec 15, 2023Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- BioSCRAPE (Bio-circuit Stochastic Single-cell Reaction Analysis and Parameter Estimation)☆30Mar 29, 2025Updated last year
- novoStoic2.0: Integrated Pathway Design Tool with Thermodynamic Considerations and Enzyme Selection☆11Apr 28, 2025Updated last year
- Release of the whole cell E. coli model.☆77Dec 10, 2024Updated last year
- Colorblind-friendly, perceptually uniform palettes for chimerax☆14Sep 26, 2020Updated 5 years ago
- A 3-Dimensional View of Human Metabolism and Disease☆32Feb 28, 2018Updated 8 years ago
- This project is a Graphical User Interface frontend for GlycoGenius, a python program that aims to be an all-in-one solution for data ana…☆16Jan 25, 2026Updated 3 months ago
- Crixus is a preprocessing tool for SPH, in particular Spartacus3D, Sphynx and GPUSPH.☆11Mar 18, 2016Updated 10 years ago
- Causal and probabilistic reasoning with continuous time dynamical systems☆20Aug 29, 2025Updated 8 months ago
- Teaching materials for cobrapy, cameo, escher and DD-DeCaF☆27Jul 12, 2022Updated 3 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- The ProteoWizard Library and Tools are a set of modular and extensible open-source, cross-platform tools and software libraries that faci…☆22Aug 25, 2023Updated 2 years ago
- A Mesa-based ABM library for epidemiological (SIR) modeling.☆14Apr 2, 2020Updated 6 years ago
- Inpainting protein sequence and structure☆12Nov 10, 2023Updated 2 years ago
- libRoadRunner: A high-performance SBML simulator☆60Mar 26, 2026Updated last month
- PanGenomePipeline☆16Apr 10, 2024Updated 2 years ago
- Standalone Python package containing libSBML with support for SBML Level 3 Core and accepted SBML Level 3 packages.☆23Mar 9, 2026Updated 2 months ago
- A modular compiler for biological chemical reaction networks☆51May 10, 2026Updated last week