linsalrob / PyFBA
A python implementation of flux balance analysis to model microbial metabolism
☆27Updated 2 years ago
Alternatives and similar repositories for PyFBA
Users that are interested in PyFBA are comparing it to the libraries listed below
Sorting:
- Enzyme-constrained genome-scale models in python☆28Updated last year
- ReFramed: metabolic modeling package☆59Updated 3 weeks ago
- Generate biomass objective function stoichiometric coefficients for genome-scale models from experimental data☆27Updated last year
- A COBRApy extension for genome-scale models of metabolism and expression (ME-models)☆36Updated 6 years ago
- Python package for building and analyzing models using ModelSEED☆23Updated last month
- StrainDesign is a python package for the computational design of metabolic networks and based on COBRApy☆42Updated 2 months ago
- D3.js based visualizations of cobrapy metabolic models☆45Updated 5 years ago
- Repository of tutorials for The COBRA Toolbox☆22Updated 2 weeks ago
- CobraMod is a Python 3 open-source package which enables modifying and extending genome-scale metabolic models with metabolic pathway inf…☆14Updated 2 weeks ago
- This repository contains the definitive copy of the biochemistry and metadata used to construct models using the ModelSEED/ProbAnno appro…☆61Updated 3 months ago
- Toolbox for including enzyme constraints on a genome-scale model.☆71Updated last week
- Python Implementation of Codon Adaption Index☆37Updated 2 years ago
- Dynamic FBA for use with COBRApy metabolic models☆10Updated last year
- Python package to study microbial communities using metabolic modeling.☆100Updated 2 weeks ago
- CBMPy is a Python based platform for constraint based modelling and analysis.☆19Updated last year
- Mackinac: A bridge between ModelSEED and COBRApy☆19Updated 6 years ago
- Computation of Microbial Ecosystems in Time and Space☆24Updated 2 weeks ago
- ☆22Updated 4 years ago
- A highly scalable, user-interactive tool for the large scale analysis of Biosynthetic Gene Clusters data☆81Updated 5 months ago
- Predict oxygen, temperature, salinity, and pH preferences of bacteria and archaea from a genome☆51Updated last month
- Untargeted metabolomics workflow for large-scale data processing and analysis implemented in Snakemake☆26Updated 4 months ago
- Python package for creating, calibrating and simulating RBA models☆12Updated last year
- Chimera: An easy to use pipeline for Genome based Metabolic Network reconstruction, evaluation and visualization.☆18Updated 2 years ago
- A high-fidelity E. coli RNA-seq compendium☆32Updated 4 years ago
- ☆24Updated 7 months ago
- a pipeline to build similarity maps of protein space☆34Updated 5 months ago
- A collection of M models downloaded from published studies☆16Updated 9 years ago
- Pathway-Guided Pruning Reconstruction of Genome-Scale Metabolic Models☆12Updated last year
- The RAVEN Toolbox for genome scale model reconstruction, curation and analysis.☆110Updated last week
- Discovery of conserved gene clusters in multiple genomes☆79Updated last month