pstjohn / d3fluxLinks
D3.js based visualizations of cobrapy metabolic models
☆50Updated 5 years ago
Alternatives and similar repositories for d3flux
Users that are interested in d3flux are comparing it to the libraries listed below
Sorting:
- StrainDesign is a python package for the computational design of metabolic networks and based on COBRApy☆46Updated last week
- Enzyme-constrained genome-scale models in python☆30Updated 2 years ago
- Toolbox for including enzyme constraints on a genome-scale model.☆79Updated last month
- cameo - computer aided metabolic engineering & optimization☆122Updated 3 years ago
- A COBRApy extension for genome-scale models of metabolism and expression (ME-models)☆35Updated 6 years ago
- Generate biomass objective function stoichiometric coefficients for genome-scale models from experimental data☆27Updated 2 years ago
- memote – the genome-scale metabolic model test suite☆143Updated 4 months ago
- The BiGG Models website server☆86Updated 6 years ago
- ReFramed: metabolic modeling package☆62Updated 3 months ago
- A Python framework for structural systems biology☆110Updated 5 years ago
- Simple cloning simulator (Golden Gate etc.) for single and combinatorial assemblies☆64Updated 7 months ago
- An integrated visual environment for metabolic modeling with common methods such as FBA, FVA and Elementary Flux Modes, and advanced feat…☆60Updated last week
- This repository contains the definitive copy of the biochemistry and metadata used to construct models using the ModelSEED/ProbAnno appro…☆64Updated 2 weeks ago
- Analysis of ensembles of metabolic network reconstructions☆21Updated 3 weeks ago
- The consensus GEM for Saccharomyces cerevisiae☆115Updated last month
- BGC Detection and Classification Using Deep Learning☆157Updated 2 years ago
- Mackinac: A bridge between ModelSEED and COBRApy☆19Updated 7 years ago
- Enzyme models that take into account kinetics, allostery and thermodynamics☆27Updated last year
- Python package for building and analyzing models using ModelSEED☆24Updated 8 months ago
- The RAVEN Toolbox for genome scale model reconstruction, curation and analysis.☆120Updated 2 weeks ago
- Metabolic Engineering Workbench☆41Updated last year
- WebLogo 3: Sequence Logos redrawn☆153Updated this week
- MSA(Multiple Sequence Alignment) visualization python package for sequence analysis☆170Updated last year
- A machine learning model for the prediction of optimal growth temperature of microorganisms and enzyme catalytic optima☆62Updated 5 years ago
- ☆23Updated 5 years ago
- Clone with Python! Data structures for double stranded DNA & simulation of homologous recombination, Gibson assembly, cut & paste cloning…☆211Updated last week
- teemi: A Python package for reproducible and FAIR microbial strain construction. Simulate the entire dbtl-cycle, generate genetic parts, …☆42Updated 3 weeks ago
- Codon usage tables in code-friendly format + Python bindings☆42Updated 7 months ago
- Python package for creating, calibrating and simulating RBA models☆13Updated 2 years ago
- Enumerating biosynthetic pathways in metabolic networks☆13Updated 10 months ago