pstjohn / d3fluxLinks
D3.js based visualizations of cobrapy metabolic models
☆47Updated 5 years ago
Alternatives and similar repositories for d3flux
Users that are interested in d3flux are comparing it to the libraries listed below
Sorting:
- Generate biomass objective function stoichiometric coefficients for genome-scale models from experimental data☆27Updated 2 years ago
- Enzyme-constrained genome-scale models in python☆28Updated last year
- A COBRApy extension for genome-scale models of metabolism and expression (ME-models)☆35Updated 6 years ago
- Toolbox for including enzyme constraints on a genome-scale model.☆78Updated 2 weeks ago
- StrainDesign is a python package for the computational design of metabolic networks and based on COBRApy☆46Updated last month
- cameo - computer aided metabolic engineering & optimization☆120Updated 2 years ago
- memote – the genome-scale metabolic model test suite☆142Updated last month
- The BiGG Models website server☆83Updated 5 years ago
- ReFramed: metabolic modeling package☆61Updated 3 weeks ago
- Simple cloning simulator (Golden Gate etc.) for single and combinatorial assemblies☆62Updated 4 months ago
- An integrated visual environment for metabolic modeling with common methods such as FBA, FVA and Elementary Flux Modes, and advanced feat…☆58Updated last week
- BGC Detection and Classification Using Deep Learning☆154Updated last year
- Mackinac: A bridge between ModelSEED and COBRApy☆19Updated 7 years ago
- A Python framework for structural systems biology☆109Updated 4 years ago
- This repository contains the definitive copy of the biochemistry and metadata used to construct models using the ModelSEED/ProbAnno appro…☆63Updated 8 months ago
- The RAVEN Toolbox for genome scale model reconstruction, curation and analysis.☆113Updated 3 weeks ago
- Analysis of ensembles of metabolic network reconstructions☆21Updated 2 weeks ago
- The consensus GEM for Saccharomyces cerevisiae☆113Updated last week
- ☆22Updated 5 years ago
- Python package for building and analyzing models using ModelSEED☆23Updated 5 months ago
- framed: a metabolic modeling package for python☆26Updated 5 years ago
- Dynamic FBA for use with COBRApy metabolic models☆10Updated 2 years ago
- General low-level API☆50Updated 3 years ago
- MSA(Multiple Sequence Alignment) visualization python package for sequence analysis☆154Updated 10 months ago
- Create force-directed graphs of RNA secondary structures.☆106Updated 5 years ago
- Python package for creating, calibrating and simulating RBA models☆12Updated 2 years ago
- Repository of tutorials for The COBRA Toolbox☆23Updated this week
- Metabolic Engineering Workbench☆40Updated last year
- ETFL: A formulation for flux balance models accounting for expression, thermodynamics, and resource allocation constraints☆16Updated 3 months ago
- Enumerating biosynthetic pathways in metabolic networks☆12Updated 8 months ago