pstjohn / d3fluxLinks
D3.js based visualizations of cobrapy metabolic models
☆47Updated 5 years ago
Alternatives and similar repositories for d3flux
Users that are interested in d3flux are comparing it to the libraries listed below
Sorting:
- StrainDesign is a python package for the computational design of metabolic networks and based on COBRApy☆43Updated 5 months ago
- Enzyme-constrained genome-scale models in python☆28Updated last year
- Toolbox for including enzyme constraints on a genome-scale model.☆77Updated 3 months ago
- Generate biomass objective function stoichiometric coefficients for genome-scale models from experimental data☆27Updated 2 years ago
- memote – the genome-scale metabolic model test suite☆135Updated 2 weeks ago
- cameo - computer aided metabolic engineering & optimization☆118Updated 2 years ago
- A COBRApy extension for genome-scale models of metabolism and expression (ME-models)☆35Updated 6 years ago
- ReFramed: metabolic modeling package☆59Updated 4 months ago
- Enumerating biosynthetic pathways in metabolic networks☆12Updated 6 months ago
- The BiGG Models website server☆83Updated 5 years ago
- Simple cloning simulator (Golden Gate etc.) for single and combinatorial assemblies☆62Updated 3 months ago
- Analysis of ensembles of metabolic network reconstructions☆21Updated 2 years ago
- This repository contains the definitive copy of the biochemistry and metadata used to construct models using the ModelSEED/ProbAnno appro…☆62Updated 6 months ago
- BGC Detection and Classification Using Deep Learning☆152Updated last year
- An integrated visual environment for metabolic modeling with common methods such as FBA, FVA and Elementary Flux Modes, and advanced feat…☆57Updated last month
- Metabolic Engineering Workbench☆40Updated last year
- A Python framework for structural systems biology☆109Updated 4 years ago
- ☆22Updated 5 years ago
- Mackinac: A bridge between ModelSEED and COBRApy☆19Updated 7 years ago
- The RAVEN Toolbox for genome scale model reconstruction, curation and analysis.☆113Updated 3 months ago
- Python package for building and analyzing models using ModelSEED☆23Updated 4 months ago
- The consensus GEM for Saccharomyces cerevisiae☆111Updated 4 months ago
- Python Implementation of Codon Adaption Index☆37Updated 2 years ago
- Dynamic FBA for use with COBRApy metabolic models☆10Updated last year
- Clone with Python! Data structures for double stranded DNA & simulation of homologous recombination, Gibson assembly, cut & paste cloning…☆192Updated 2 weeks ago
- A machine learning model for the prediction of optimal growth temperature of microorganisms and enzyme catalytic optima☆57Updated 4 years ago
- A collection of M models downloaded from published studies☆16Updated 9 years ago
- Python package to study microbial communities using metabolic modeling.☆106Updated last week
- framed: a metabolic modeling package for python☆26Updated 5 years ago
- Enzyme models that take into account kinetics, allostery and thermodynamics☆27Updated 11 months ago