EPFL-LCSB / etfl

Related projects: ⓘ

• SysBioInra / RBApy
  Python package for creating, calibrating and simulating RBA models
  ☆11Updated last year
• jclachance / BOFdat
  Generate biomass objective function stoichiometric coefficients for genome-scale models from experimental data
  ☆26Updated last year
• klamt-lab / straindesign
  StrainDesign is a python package for the computational design of metabolic networks and based on COBRApy
  ☆34Updated 2 months ago
• cdanielmachado / reframed
  ReFramed: metabolic modeling package
  ☆53Updated last month
• biosustain / Maud
  Enzyme models that take into account kinetics, allostery and thermodynamics
  ☆26Updated 2 weeks ago
• SBRG / cobrame
  A COBRApy extension for genome-scale models of metabolism and expression (ME-models)
  ☆33Updated 5 years ago
• micom-dev / micom
  Python package to study microbial communities using metabolic modeling.
  ☆89Updated last week
• ginkgobioworks / geckopy
  Enzyme-constrained genome-scale models in python
  ☆25Updated 10 months ago
• SysBioChalmers / GECKO
  Toolbox for including enzyme constraints on a genome-scale model.
  ☆67Updated 3 weeks ago
• SBRG / precise-db
  A high-fidelity E. coli RNA-seq compendium
  ☆32Updated 3 years ago
• cnapy-org / CNApy
  An integrated visual environment for metabolic modeling with common methods such as FBA, FVA and Elementary Flux Modes, and advanced feat…
  ☆44Updated 3 weeks ago
• EPFL-LCSB / pytfa
  A Python 3 implementation of Thermodynamics-based Flux Analysis
  ☆38Updated last year
• ModelSEED / ModelSEEDDatabase
  This repository contains the definitive copy of the biochemistry and metadata used to construct models using the ModelSEED/ProbAnno appro…
  ☆53Updated this week
• jdbrunner / surfin_fba
  Dynamic FBA for use with COBRApy metabolic models
  ☆10Updated 11 months ago
• jensenlab / gapsplit
  Efficient random sampling for COBRA models
  ☆12Updated 2 years ago
• SystemsBioinformatics / cbmpy
  CBMPy is a Python based platform for constraint based modelling and analysis.
  ☆19Updated 4 months ago
• mmundy42 / mackinac
  Mackinac: A bridge between ModelSEED and COBRApy
  ☆16Updated 6 years ago
• opencobra / m_model_collection
  A collection of M models downloaded from published studies
  ☆15Updated 8 years ago
• segrelab / comets
  Computation of Microbial Ecosystems in Time and Space
  ☆19Updated this week
• cdanielmachado / embl_gems
  EMBL GEMs: A collection of GEnome-scale Models for bacterial species
  ☆24Updated 5 years ago
• latendre / PythonCyc
  ☆22Updated 4 years ago
• RamanLab / metquest
  Enumerating biosynthetic pathways in metabolic networks
  ☆11Updated last year
• pstjohn / d3flux
  D3.js based visualizations of cobrapy metabolic models
  ☆37Updated 4 years ago
• fumiomatsuda / mfapy
  A python toolbox for 13C metabolic flux analysis
  ☆18Updated 2 weeks ago
• OrensteinLab / DeCoDe
  Degenerate Codon Design
  ☆12Updated 4 years ago
• cdanielmachado / framed
  framed: a metabolic modeling package for python
  ☆26Updated 4 years ago
• ModelSEED / ModelSEEDpy
  Python package for building and analyzing models using ModelSEED
  ☆17Updated last month
• opencobra / Medusa
  Analysis of ensembles of metabolic network reconstructions
  ☆19Updated last year
• modsim / FluxML
  A Universal Modeling Language for Metabolic Flux Analysis
  ☆9Updated 4 months ago
• hiyama341 / teemi
  teemi: A Python package for reproducible and FAIR microbial strain construction. Simulate the entire dbtl-cycle, generate genetic parts, …
  ☆34Updated 3 weeks ago