EPFL-LCSB / etflLinks
ETFL: A formulation for flux balance models accounting for expression, thermodynamics, and resource allocation constraints
☆16Updated 7 months ago
Alternatives and similar repositories for etfl
Users that are interested in etfl are comparing it to the libraries listed below
Sorting:
- Python package for creating, calibrating and simulating RBA models☆13Updated 2 years ago
- memote – the genome-scale metabolic model test suite☆144Updated 5 months ago
- Generate biomass objective function stoichiometric coefficients for genome-scale models from experimental data☆27Updated 2 years ago
- Toolbox for including enzyme constraints on a genome-scale model.☆80Updated this week
- StrainDesign is a python package for the computational design of metabolic networks and based on COBRApy☆48Updated last month
- ReFramed: metabolic modeling package☆63Updated 4 months ago
- Enzyme models that take into account kinetics, allostery and thermodynamics☆27Updated last year
- An integrated visual environment for metabolic modeling with common methods such as FBA, FVA and Elementary Flux Modes, and advanced feat…☆62Updated last month
- Enzyme-constrained genome-scale models in python☆34Updated 2 years ago
- D3.js based visualizations of cobrapy metabolic models☆50Updated 5 years ago
- A Python 3 implementation of Thermodynamics-based Flux Analysis☆43Updated 7 months ago
- cameo - computer aided metabolic engineering & optimization☆124Updated 3 years ago
- The RAVEN Toolbox for genome scale model reconstruction, curation and analysis.☆121Updated 3 weeks ago
- Mackinac: A bridge between ModelSEED and COBRApy☆19Updated 7 years ago
- Retrieves kcat data and adds protein allocation constraints to stoichiometric metabolic models according to the sMOMENT method☆15Updated 11 months ago
- framed: a metabolic modeling package for python☆26Updated 6 years ago
- Dynamic FBA for use with COBRApy metabolic models☆10Updated 2 years ago
- Python package to study microbial communities using metabolic modeling.☆115Updated 2 weeks ago
- Webserver and command line tool for annotating engineered plasmids☆136Updated 6 months ago
- A high-fidelity E. coli RNA-seq compendium☆33Updated 4 years ago
- CBMPy is a Python based platform for constraint based modelling and analysis.☆19Updated last year
- A container for all enzyme constrained models created by GECKO.☆16Updated 3 years ago
- This repository contains the definitive copy of the biochemistry and metadata used to construct models using the ModelSEED/ProbAnno appro…☆65Updated last month
- Teaching materials for cobrapy, cameo, escher and DD-DeCaF☆25Updated 3 years ago
- The BiGG Models website server☆88Updated 6 years ago
- A collection of M models downloaded from published studies☆17Updated 9 years ago
- A COBRApy extension for genome-scale models of metabolism and expression (ME-models)☆35Updated 7 years ago
- WebLogo 3: Sequence Logos redrawn☆154Updated last week
- ☆10Updated 2 years ago
- Analysis of ensembles of metabolic network reconstructions☆21Updated this week