ETFL: A formulation for flux balance models accounting for expression, thermodynamics, and resource allocation constraints
☆18Jul 8, 2025Updated last year
Alternatives and similar repositories for etfl
Users that are interested in etfl are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Python package for creating, calibrating and simulating RBA models☆14Apr 8, 2026Updated 3 months ago
- A Python 3 implementation of Thermodynamics-based Flux Analysis☆46Jul 9, 2025Updated last year
- Genome scale metabolic models in SBML format☆11Nov 16, 2021Updated 4 years ago
- ☆11Oct 21, 2023Updated 2 years ago
- A utility framework for the management of genome-scale metabolic models.☆11Mar 28, 2020Updated 6 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Symbolic Kinetic Models with Python☆37Jun 4, 2025Updated last year
- Scripts to build high-quality genome-scale metabolic model by using a deep neural network to guide gapfilling☆19May 26, 2026Updated 2 months ago
- Retrieves kcat data and adds protein allocation constraints to stoichiometric metabolic models according to the sMOMENT method. Also chec…☆17Feb 28, 2025Updated last year
- Pipeline for automatic processing and quality control of mass spectrometry data☆14Jan 30, 2025Updated last year
- CBMPy is a Python based platform for constraint based modelling and analysis.☆20May 26, 2026Updated 2 months ago
- framed: a metabolic modeling package for python☆26Nov 7, 2019Updated 6 years ago
- Enzyme-constrained genome-scale models in python☆38Oct 25, 2023Updated 2 years ago
- EMBL GEMs: A collection of GEnome-scale Models for bacterial species☆32Mar 5, 2019Updated 7 years ago
- Package to link to CGAL (Computational Geometry Algorithms Library) header files. Downloads CGAL version 6.0.1 on install.☆13Oct 10, 2025Updated 9 months ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Compute strain abundance in a defined microbial community☆10Jul 27, 2023Updated 2 years ago
- the toolbox for Microbial and personalized GEM, REactiobiome and community NEtwork modelling☆11Feb 3, 2024Updated 2 years ago
- Sample R package with C/C++ code to trigger Address and Undefined Behaviour Sanitizers☆13Feb 12, 2026Updated 5 months ago
- agent based modelling☆39Aug 28, 2024Updated last year
- A cookiecutter template that reflects my favored structure for setting up Snakemake-based analysis pipelines.☆16Jul 25, 2016Updated 10 years ago
- A snakemake workflow for benchmarking variant calling approaches with Genome in a Bottle (GIAB), CHM (syndip) or other custom datasets☆13Jul 15, 2026Updated last week
- ☆13Jul 24, 2024Updated 2 years ago
- Reproducible Research in Finse☆10Aug 5, 2020Updated 5 years ago
- A container for all enzyme constrained models created by GECKO.☆17Jul 4, 2022Updated 4 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Python interface for running COMETS simulations and analyzing the results☆16May 19, 2026Updated 2 months ago
- ROCC: Reinforcement learning for the Optimisation of Co-Cultures☆13Nov 17, 2020Updated 5 years ago
- A collection of tools to work with Illumina's basespace☆13Apr 10, 2019Updated 7 years ago
- Github for the TOPCONS2☆17Mar 6, 2025Updated last year
- Higher-Order Co-occurrence☆12Nov 9, 2021Updated 4 years ago
- Python package for building SBML models without needing to use libSBML.☆11Aug 18, 2021Updated 4 years ago
- Azure Functions for retrieving data from SharePoint Online, Dynamics 365, and Dynamics 365 Business Central with Entra ID app and Microso…☆15Mar 4, 2025Updated last year
- Fast and scalable variant annotation tool☆30May 1, 2022Updated 4 years ago
- Muller diagrams excel at visualizing evolutionary dynamics of a population over time. A common use case, and the intended use case durin…☆15Oct 13, 2020Updated 5 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Microsoft Azure HPC & Big Compute☆15Aug 18, 2019Updated 6 years ago
- Molcas wavefunction assistent☆13Jul 2, 2021Updated 5 years ago
- Predict All Links In Ecological Networks☆13Dec 9, 2021Updated 4 years ago
- FLYCOP (FLexible sYnthetic Consortium OPtimization)☆12Sep 24, 2018Updated 7 years ago
- Protonate Your SMILES! Mirror of https://git.durrantlab.pitt.edu/jdurrant/dimorphite_dl/☆12Mar 13, 2022Updated 4 years ago
- Base image providing dependencies for ASKCOS Docker images☆12Jun 14, 2024Updated 2 years ago
- PPoPP24 AGAThA: Fast and Efficient GPU Acceleration of Guided Sequence Alignment for Long Read Mapping☆22May 8, 2024Updated 2 years ago