ETFL: A formulation for flux balance models accounting for expression, thermodynamics, and resource allocation constraints
☆18Jul 8, 2025Updated 11 months ago
Alternatives and similar repositories for etfl
Users that are interested in etfl are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Python package for creating, calibrating and simulating RBA models☆13Apr 8, 2026Updated 2 months ago
- A Python 3 implementation of Thermodynamics-based Flux Analysis☆46Jul 9, 2025Updated 11 months ago
- Enzyme models that take into account kinetics, allostery and thermodynamics☆29Sep 3, 2024Updated last year
- Genome scale metabolic models in SBML format☆11Nov 16, 2021Updated 4 years ago
- ☆10Oct 21, 2023Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A utility framework for the management of genome-scale metabolic models.☆11Mar 28, 2020Updated 6 years ago
- Retrieves kcat data and adds protein allocation constraints to stoichiometric metabolic models according to the sMOMENT method. Also chec…☆17Feb 28, 2025Updated last year
- Enzyme-constrained genome-scale models in python☆38Oct 25, 2023Updated 2 years ago
- CBMPy is a Python based platform for constraint based modelling and analysis.☆20May 26, 2026Updated 2 weeks ago
- An integrated visual environment for metabolic modeling methods such as FBA, FVA and Elementary Flux Modes, and advanced features such as…☆67May 28, 2026Updated 2 weeks ago
- framed: a metabolic modeling package for python☆26Nov 7, 2019Updated 6 years ago
- Package to link to CGAL (Computational Geometry Algorithms Library) header files. Downloads CGAL version 6.0.1 on install.☆13Oct 10, 2025Updated 8 months ago
- Compute strain abundance in a defined microbial community☆10Jul 27, 2023Updated 2 years ago
- Sample R package with C/C++ code to trigger Address and Undefined Behaviour Sanitizers☆13Feb 12, 2026Updated 4 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Software tool for metabolic modelling in Systems Biology☆10Dec 30, 2020Updated 5 years ago
- agent based modelling☆37Aug 28, 2024Updated last year
- A cookiecutter template that reflects my favored structure for setting up Snakemake-based analysis pipelines.☆16Jul 25, 2016Updated 9 years ago
- A snakemake workflow for benchmarking variant calling approaches with Genome in a Bottle (GIAB), CHM (syndip) or other custom datasets☆13Jun 8, 2026Updated last week
- A container for all enzyme constrained models created by GECKO.☆17Jul 4, 2022Updated 3 years ago
- Score an Affinity Purification Mass Spectrometry Proteomics Experiment for Interactor Confidence☆11Jun 24, 2015Updated 10 years ago
- Pipeline for automatic processing and quality control of mass spectrometry data☆13Jan 30, 2025Updated last year
- ☆13Jul 24, 2024Updated last year
- Reproducible Research in Finse☆10Aug 5, 2020Updated 5 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- the toolbox for Microbial and personalized GEM, REactiobiome and community NEtwork modelling☆11Feb 3, 2024Updated 2 years ago
- Python package for building SBML models without needing to use libSBML.☆11Aug 18, 2021Updated 4 years ago
- Higher-Order Co-occurrence☆12Nov 9, 2021Updated 4 years ago
- A collection of tools to work with Illumina's basespace☆13Apr 10, 2019Updated 7 years ago
- Twitter follower graphs of @Die_Gruenen & @AfD, including cluster and topic analysis☆10Jul 10, 2020Updated 5 years ago
- Azure Functions for retrieving data from SharePoint Online, Dynamics 365, and Dynamics 365 Business Central with Entra ID app and Microso…☆15Mar 4, 2025Updated last year
- Molcas wavefunction assistent☆13Jul 2, 2021Updated 4 years ago
- Muller diagrams excel at visualizing evolutionary dynamics of a population over time. A common use case, and the intended use case durin…☆15Oct 13, 2020Updated 5 years ago
- Python interface for running COMETS simulations and analyzing the results☆16May 19, 2026Updated 3 weeks ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Predict All Links In Ecological Networks☆13Dec 9, 2021Updated 4 years ago
- PPoPP24 AGAThA: Fast and Efficient GPU Acceleration of Guided Sequence Alignment for Long Read Mapping☆22May 8, 2024Updated 2 years ago
- Code from "Deep Learning Of The Regulatory Grammar Of Yeast 5′ Untranslated Regions From 500,000 Random Sequences"☆16Sep 26, 2017Updated 8 years ago
- Fast and scalable variant annotation tool☆30May 1, 2022Updated 4 years ago
- Github for the TOPCONS2☆17Mar 6, 2025Updated last year
- Protonate Your SMILES! Mirror of https://git.durrantlab.pitt.edu/jdurrant/dimorphite_dl/☆12Mar 13, 2022Updated 4 years ago
- Code for the paper "Enzyme Promiscuity Prediction using hierarchy-informed multi-label classification"☆13Aug 7, 2023Updated 2 years ago