Python package for creating, calibrating and simulating RBA models
☆14Apr 8, 2026Updated 3 months ago
Alternatives and similar repositories for RBApy
Users that are interested in RBApy are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ETFL: A formulation for flux balance models accounting for expression, thermodynamics, and resource allocation constraints☆18Jul 8, 2025Updated last year
- Enzyme models that take into account kinetics, allostery and thermodynamics☆29Sep 3, 2024Updated last year
- Python interface for running COMETS simulations and analyzing the results☆16May 19, 2026Updated 2 months ago
- ReFramed: metabolic modeling package☆64Jun 26, 2026Updated 3 weeks ago
- Retrieves kcat data and adds protein allocation constraints to stoichiometric metabolic models according to the sMOMENT method. Also chec…☆17Feb 28, 2025Updated last year
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Python package for building and analyzing models using ModelSEED☆31Feb 11, 2026Updated 5 months ago
- Efficient random sampling for COBRA models☆14Oct 14, 2021Updated 4 years ago
- Scripts to build high-quality genome-scale metabolic model by using a deep neural network to guide gapfilling☆19May 26, 2026Updated last month
- An integrated visual environment for metabolic modeling methods such as FBA, FVA and Elementary Flux Modes, and advanced features such as…☆69Updated this week
- cameo - computer aided metabolic engineering & optimization☆127Nov 7, 2022Updated 3 years ago
- CBMPy is a Python based platform for constraint based modelling and analysis.☆20May 26, 2026Updated last month
- EMBL GEMs: A collection of GEnome-scale Models for bacterial species☆32Mar 5, 2019Updated 7 years ago
- An alternative approach to capture the breadth of cellular functions by performing a functional analysis of existing biological networks.☆16Oct 19, 2022Updated 3 years ago
- Compute strain abundance in a defined microbial community☆10Jul 27, 2023Updated 2 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- the toolbox for Microbial and personalized GEM, REactiobiome and community NEtwork modelling☆11Feb 3, 2024Updated 2 years ago
- Uncover organisms' metabolic blueprints☆18Jun 18, 2024Updated 2 years ago
- Registry of containerized biosimulation tools that support a standard command-line interface☆15Updated this week
- agent based modelling☆39Aug 28, 2024Updated last year
- Metabolic Engineering Workbench☆42Jun 9, 2024Updated 2 years ago
- General low-level API☆50Jul 18, 2022Updated 4 years ago
- A cookiecutter template that reflects my favored structure for setting up Snakemake-based analysis pipelines.☆16Jul 25, 2016Updated 9 years ago
- Genome scale metabolic models in SBML format☆11Nov 16, 2021Updated 4 years ago
- A snakemake workflow for benchmarking variant calling approaches with Genome in a Bottle (GIAB), CHM (syndip) or other custom datasets☆13Updated this week
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Causal and probabilistic reasoning with continuous time dynamical systems☆21Aug 29, 2025Updated 10 months ago
- memote – the genome-scale metabolic model test suite☆149Aug 14, 2025Updated 11 months ago
- Reproducible Research in Finse☆10Aug 5, 2020Updated 5 years ago