Alternatives and similar repositories for Medusa

Users that are interested in Medusa are comparing it to the libraries listed below

• jclachance / BOFdat
  Generate biomass objective function stoichiometric coefficients for genome-scale models from experimental data
  ☆27Updated last year
• pstjohn / d3flux
  D3.js based visualizations of cobrapy metabolic models
  ☆45Updated 5 years ago
• SBRG / cobrame
  A COBRApy extension for genome-scale models of metabolism and expression (ME-models)
  ☆36Updated 6 years ago
• SBRG / bigg_models
  The BiGG Models website server
  ☆83Updated 5 years ago
• SysBioChalmers / GECKO
  Toolbox for including enzyme constraints on a genome-scale model.
  ☆74Updated last month
• biosustain / cameo
  cameo - computer aided metabolic engineering & optimization
  ☆116Updated 2 years ago
• cdanielmachado / reframed
  ReFramed: metabolic modeling package
  ☆59Updated last month
• latendre / PythonCyc
  ☆22Updated 4 years ago
• klamt-lab / straindesign
  StrainDesign is a python package for the computational design of metabolic networks and based on COBRApy
  ☆42Updated 3 months ago
• opencobra / memote
  memote – the genome-scale metabolic model test suite
  ☆133Updated last year
• ModelSEED / ModelSEEDpy
  Python package for building and analyzing models using ModelSEED
  ☆23Updated 2 months ago
• micom-dev / micom
  Python package to study microbial communities using metabolic modeling.
  ☆103Updated 2 weeks ago
• mmundy42 / mackinac
  Mackinac: A bridge between ModelSEED and COBRApy
  ☆19Updated 6 years ago
• ginkgobioworks / geckopy
  Enzyme-constrained genome-scale models in python
  ☆28Updated last year
• Toepfer-Lab / cobramod
  CobraMod is a Python 3 open-source package which enables modifying and extending genome-scale metabolic models with metabolic pathway inf…
  ☆15Updated last month
• SystemsBioinformatics / cbmpy
  CBMPy is a Python based platform for constraint based modelling and analysis.
  ☆19Updated last year
• cnapy-org / CNApy
  An integrated visual environment for metabolic modeling with common methods such as FBA, FVA and Elementary Flux Modes, and advanced feat…
  ☆55Updated 4 months ago
• ModelSEED / ModelSEEDDatabase
  This repository contains the definitive copy of the biochemistry and metadata used to construct models using the ModelSEED/ProbAnno appro…
  ☆63Updated 4 months ago
• zhanglab / psamm
  Curation and analysis of metabolic models
  ☆35Updated last year
• opencobra / COBRA.tutorials
  Repository of tutorials for The COBRA Toolbox
  ☆22Updated last week
• medema-group / bigslice
  A highly scalable, user-interactive tool for the large scale analysis of Biosynthetic Gene Clusters data
  ☆82Updated 7 months ago
• SysBioInra / RBApy
  Python package for creating, calibrating and simulating RBA models
  ☆12Updated 2 years ago
• cdanielmachado / embl_gems
  EMBL GEMs: A collection of GEnome-scale Models for bacterial species
  ☆28Updated 6 years ago
• EPFL-LCSB / etfl
  ETFL: A formulation for flux balance models accounting for expression, thermodynamics, and resource allocation constraints
  ☆16Updated 10 months ago
• cdanielmachado / framed
  framed: a metabolic modeling package for python
  ☆26Updated 5 years ago
• ecocyc / PythonCyc
  ☆24Updated 8 months ago
• RamanLab / metquest
  Enumerating biosynthetic pathways in metabolic networks
  ☆12Updated 4 months ago
• BioSystemsUM / MEWpy
  Metabolic Engineering Workbench
  ☆40Updated last year
• tamascogustavo / chimera
  Chimera: An easy to use pipeline for Genome based Metabolic Network reconstruction, evaluation and visualization.
  ☆18Updated 2 years ago
• SysBioChalmers / ecModels
  A container for all enzyme constrained models created by GECKO.
  ☆13Updated 2 years ago