opencobra / MedusaLinks
Analysis of ensembles of metabolic network reconstructions
☆21Updated 2 years ago
Alternatives and similar repositories for Medusa
Users that are interested in Medusa are comparing it to the libraries listed below
Sorting:
- cameo - computer aided metabolic engineering & optimization☆117Updated 2 years ago
- D3.js based visualizations of cobrapy metabolic models☆45Updated 5 years ago
- memote – the genome-scale metabolic model test suite☆133Updated last year
- Toolbox for including enzyme constraints on a genome-scale model.☆76Updated 2 months ago
- Protein structure comparison tools such as SSAP and SNAP☆64Updated last year
- StrainDesign is a python package for the computational design of metabolic networks and based on COBRApy☆42Updated 4 months ago
- An integrated visual environment for metabolic modeling with common methods such as FBA, FVA and Elementary Flux Modes, and advanced feat…☆56Updated 4 months ago
- Generate biomass objective function stoichiometric coefficients for genome-scale models from experimental data☆27Updated 2 years ago
- Simple cloning simulator (Golden Gate etc.) for single and combinatorial assemblies☆61Updated 2 months ago
- Algorithm for ultra-scale multiple sequence alignments (3M protein sequences in 5 minutes and 24 GB of RAM)☆158Updated 9 months ago
- A COBRApy extension for genome-scale models of metabolism and expression (ME-models)☆35Updated 6 years ago
- Metabolic Engineering Workbench☆40Updated last year
- The BiGG Models website server☆83Updated 5 years ago
- BGC Detection and Classification Using Deep Learning☆146Updated last year
- Enzyme-constrained genome-scale models in python☆28Updated last year
- sensitive and precise assembly of short sequencing reads☆157Updated 9 months ago
- General low-level API☆50Updated 2 years ago
- A collection of tools for Multiple Alignments of DNA, RNA, Protein Sequence☆106Updated 5 months ago
- An RNA manipulation library.☆56Updated last year
- ReFramed: metabolic modeling package☆59Updated 2 months ago
- Mackinac: A bridge between ModelSEED and COBRApy☆19Updated 6 years ago
- A Python framework for structural systems biology☆109Updated 4 years ago
- nucleic acid folding☆94Updated 11 months ago
- Python package to study microbial communities using metabolic modeling.☆104Updated last month
- A python implementation of the Statistical Coupling Analysis (SCA)☆25Updated 6 years ago
- A fast multiple sequence alignment program.☆142Updated last week
- A route planner for DNA assembly☆36Updated 2 months ago
- ☆22Updated 4 years ago
- Clone with Python! Data structures for double stranded DNA & simulation of homologous recombination, Gibson assembly, cut & paste cloning…☆181Updated 2 weeks ago
- This repository contains the definitive copy of the biochemistry and metadata used to construct models using the ModelSEED/ProbAnno appro…☆63Updated 5 months ago