Alternatives and similar repositories for Medusa:

Users that are interested in Medusa are comparing it to the libraries listed below

• jclachance / BOFdat
  Generate biomass objective function stoichiometric coefficients for genome-scale models from experimental data
  ☆27Updated last year
• BioSystemsUM / MEWpy
  Metabolic Engineering Workbench
  ☆39Updated 9 months ago
• Toepfer-Lab / cobramod
  CobraMod is a Python 3 open-source package which enables modifying and extending genome-scale metabolic models with metabolic pathway inf…
  ☆13Updated 7 months ago
• pstjohn / d3flux
  D3.js based visualizations of cobrapy metabolic models
  ☆45Updated 5 years ago
• SysBioChalmers / GECKO
  Toolbox for including enzyme constraints on a genome-scale model.
  ☆70Updated 5 months ago
• SBRG / cobrame
  A COBRApy extension for genome-scale models of metabolism and expression (ME-models)
  ☆36Updated 6 years ago
• klamt-lab / straindesign
  StrainDesign is a python package for the computational design of metabolic networks and based on COBRApy
  ☆41Updated 2 weeks ago
• ginkgobioworks / geckopy
  Enzyme-constrained genome-scale models in python
  ☆25Updated last year
• cdanielmachado / reframed
  ReFramed: metabolic modeling package
  ☆58Updated 7 months ago
• cnapy-org / CNApy
  An integrated visual environment for metabolic modeling with common methods such as FBA, FVA and Elementary Flux Modes, and advanced feat…
  ☆51Updated 3 weeks ago
• latendre / PythonCyc
  ☆22Updated 4 years ago
• biosustain / cameo
  cameo - computer aided metabolic engineering & optimization
  ☆115Updated 2 years ago
• SBRG / bigg_models
  The BiGG Models website server
  ☆81Updated 5 years ago
• SysBioInra / RBApy
  Python package for creating, calibrating and simulating RBA models
  ☆11Updated last year
• UCLOrengoGroup / cath-tools
  Protein structure comparison tools such as SSAP and SNAP
  ☆63Updated last year
• mmundy42 / mackinac
  Mackinac: A bridge between ModelSEED and COBRApy
  ☆19Updated 6 years ago
• SystemsBioinformatics / cbmpy
  CBMPy is a Python based platform for constraint based modelling and analysis.
  ☆19Updated 10 months ago
• jdbrunner / surfin_fba
  Dynamic FBA for use with COBRApy metabolic models
  ☆10Updated last year
• opencobra / COBRA.tutorials
  Repository of tutorials for The COBRA Toolbox
  ☆21Updated last week
• Benjamin-Lee / CodonAdaptationIndex
  Python Implementation of Codon Adaption Index
  ☆37Updated 2 years ago
• medema-group / bigslice
  A highly scalable, user-interactive tool for the large scale analysis of Biosynthetic Gene Clusters data
  ☆78Updated 4 months ago
• ModelSEED / ModelSEEDDatabase
  This repository contains the definitive copy of the biochemistry and metadata used to construct models using the ModelSEED/ProbAnno appro…
  ☆59Updated last month
• SBRG / precise-db
  A high-fidelity E. coli RNA-seq compendium
  ☆32Updated 4 years ago
• nf-core / epitopeprediction
  A bioinformatics best-practice analysis pipeline for epitope prediction and annotation
  ☆42Updated 3 weeks ago
• hiyama341 / teemi
  teemi: A Python package for reproducible and FAIR microbial strain construction. Simulate the entire dbtl-cycle, generate genetic parts, …
  ☆41Updated last month
• ModelSEED / ModelSEEDpy
  Python package for building and analyzing models using ModelSEED
  ☆22Updated 2 weeks ago
• opencobra / memote
  memote – the genome-scale metabolic model test suite
  ☆131Updated last year
• Edinburgh-Genome-Foundry / codon-usage-tables
  Codon usage tables in code-friendly format + Python bindings
  ☆35Updated last month
• opencobra / m_model_collection
  A collection of M models downloaded from published studies
  ☆16Updated 9 years ago
• benchling / clustalo-python
  A Python wrapper around Clustal Omega (http://www.clustal.org/omega/)
  ☆22Updated 3 years ago