Alternatives and similar repositories for troppo

Users that are interested in troppo are comparing it to the libraries listed below

• SysBioChalmers / Human-GEM
  The generic genome-scale metabolic model of Homo sapiens
  ☆121Updated 3 months ago
• SysBioChalmers / RAVEN
  The RAVEN Toolbox for genome scale model reconstruction, curation and analysis.
  ☆113Updated 3 months ago
• jclachance / BOFdat
  Generate biomass objective function stoichiometric coefficients for genome-scale models from experimental data
  ☆27Updated 2 years ago
• saezlab / pypath
  Python module for prior knowledge integration. Builds databases of signaling pathways, enzyme-substrate interactions, complexes, annotat…
  ☆148Updated this week
• gecrooks / weblogo
  WebLogo 3: Sequence Logos redrawn
  ☆152Updated 3 months ago
• SysBioChalmers / yeast-GEM
  The consensus GEM for Saccharomyces cerevisiae
  ☆111Updated 4 months ago
• sib-swiss / intermediate-python-training
  ☆68Updated last week
• bionumpy / bionumpy
  Python library for array programming on biological datasets. Documentation available at: https://bionumpy.github.io/bionumpy/
  ☆283Updated 2 months ago
• openvax / mhctools
  Python interface to running command-line and web-based MHC binding predictors
  ☆98Updated 10 months ago
• SBRG / ssbio
  A Python framework for structural systems biology
  ☆109Updated 4 years ago
• cdanielmachado / reframed
  ReFramed: metabolic modeling package
  ☆59Updated 4 months ago
• opencobra / memote
  memote – the genome-scale metabolic model test suite
  ☆135Updated 2 weeks ago
• SBRG / Recon3D
  A 3-Dimensional View of Human Metabolism and Disease
  ☆30Updated 7 years ago
• ThierryMondeel / Systems_Biology_FBA_tutorial
  Python, modeling and Flux balance analysis tutorials for the undergraduate Systems Biology course in Amsterdam
  ☆14Updated 6 years ago
• SBRG / bigg_models
  The BiGG Models website server
  ☆83Updated 5 years ago
• SysBioChalmers / GECKO
  Toolbox for including enzyme constraints on a genome-scale model.
  ☆77Updated 3 months ago
• pydna-group / pydna
  Clone with Python! Data structures for double stranded DNA & simulation of homologous recombination, Gibson assembly, cut & paste cloning…
  ☆192Updated 2 weeks ago
• BioSystemsUM / MEWpy
  Metabolic Engineering Workbench
  ☆40Updated last year
• Genentech / BRAID
  BRAID is a department within Genentech dedicated to advancing biological and clinical sciences through artificial intelligence.
  ☆209Updated 2 weeks ago
• antigenomics / vdjdb-db
  🗂️ [vdjdb.cdr3.net is up and running] Git-based TCR database storage & management. Submissions welcome!
  ☆140Updated this week
• fayjustin / computational_biology
  course material
  ☆131Updated 2 years ago
• Ashish438 / Python-for-Bioinformatics
  Python for Bioinformatics consist of a variety of python programmes,frequently used by bioinformaticians while handling biological data e…
  ☆43Updated last year
• boscoh / uniprot
  retrieve protein sequence identifiers and metadata from http://uniprot.org
  ☆68Updated 3 years ago
• ViennaRNA / ViennaRNA
  The ViennaRNA Package
  ☆357Updated last month
• mmundy42 / mackinac
  Mackinac: A bridge between ModelSEED and COBRApy
  ☆19Updated 7 years ago
• evanpeikon / Python_Fundamentals_Biology
  Python Fundamentals for Biologists
  ☆36Updated 9 months ago
• opencobra / COBRA.tutorials
  Repository of tutorials for The COBRA Toolbox
  ☆22Updated last week
• evanpeikon / Evaluating_ML_Biology
  A biotechnologist's guide to evaluating machine learning algorithms, with practical Python examples
  ☆21Updated 6 months ago
• churchmanlab / genewalk
  GeneWalk identifies relevant gene functions for a biological context using network representation learning
  ☆132Updated last year
• cytoflow / cytoflow
  A Python toolbox for quantitative, reproducible flow cytometry analysis
  ☆199Updated this week