Reconstruction algorithms for Python
☆26Oct 23, 2024Updated last year
Alternatives and similar repositories for troppo
Users that are interested in troppo are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Constraint-based modeling framework for the enumeration of pathway analysis concepts☆14Jul 6, 2023Updated 2 years ago
- Metabolic Engineering Workbench☆42Jun 9, 2024Updated 2 years ago
- The generic genome-scale metabolic model of Homo sapiens☆162Mar 30, 2026Updated 2 months ago
- An implementation of genome-scale model reconstruction using Cost Optimization Reaction Dependency Assessment by Schultz et. al☆25Jul 15, 2024Updated last year
- ReFramed: metabolic modeling package☆64May 4, 2026Updated last month
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A Python Library to interact with the Cell Collective API v2☆12Dec 8, 2022Updated 3 years ago
- framed: a metabolic modeling package for python☆26Nov 7, 2019Updated 6 years ago
- Pipeline for the generation and simulation of personalized Flux Balance Analysis models☆11Feb 14, 2021Updated 5 years ago
- An integrated visual environment for metabolic modeling methods such as FBA, FVA and Elementary Flux Modes, and advanced features such as…☆66May 28, 2026Updated last week
- D3.js based visualizations of cobrapy metabolic models☆51Mar 10, 2020Updated 6 years ago
- The consensus GEM for Saccharomyces cerevisiae☆127Updated this week
- biochem4j: integrated and extensible biochemical knowledge through graph databases☆12Apr 12, 2018Updated 8 years ago
- COBRApy is a package for constraint-based modeling of metabolic networks.☆563May 28, 2026Updated last week
- Data-Driven Constraint-based analysis☆12Nov 4, 2022Updated 3 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- PyBoolNet is a Python package for the generation, modification and analysis of Boolean networks.☆54Mar 3, 2026Updated 3 months ago
- SMETANA: a tool to analyse interactions in microbial communities☆70May 6, 2025Updated last year
- Informed prediction and analysis of bacterial metabolic pathways and genome-scale networks☆215May 30, 2026Updated last week
- The binning tool with dynamic contrastive learning and deep language model☆23Nov 14, 2025Updated 6 months ago
- Python package for creating, calibrating and simulating RBA models☆13Apr 8, 2026Updated 2 months ago
- Ratio of the interferon-γ signature to the immunosuppression signature predicts anti-PD-1 therapy response in melanoma☆13Jun 4, 2023Updated 3 years ago
- BiGMeC - Biosynthetic Gene cluster Metabolic pathway Constructor☆16May 14, 2023Updated 3 years ago
- Bayesian Markov Model motif discovery tool version 2 - An expectation maximization algorithm for the de novo discovery of enriched motifs…☆17Feb 1, 2021Updated 5 years ago
- CobraMod is a Python 3 open-source package which enables modifying and extending genome-scale metabolic models with metabolic pathway inf…☆18May 11, 2026Updated 3 weeks ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Mapping-Assisted Targeted-Assembly for Metagenomics☆27Mar 28, 2025Updated last year
- The standard for open-source GEMs on GitHub☆22Oct 26, 2023Updated 2 years ago
- rg completion for ddc.vim☆17Sep 11, 2025Updated 8 months ago
- Efficient random sampling for COBRA models☆14Oct 14, 2021Updated 4 years ago
- A template website for presenting your reproducible website☆16Apr 12, 2023Updated 3 years ago
- The SBML Test Suite is a conformance testing system. It allows developers and users to test the degree and correctness of the SBML suppor…☆27Dec 3, 2025Updated 6 months ago
- PaNeV: an R package for a pathway-based network visualization☆10Aug 25, 2025Updated 9 months ago
- R package to Import and Modify SVG (XML) Graphic Files☆27Nov 1, 2024Updated last year
- Retrieve and normalize records from ICTRP☆10May 26, 2020Updated 6 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Linking MAGs with 16S rRNA marker genes☆27Feb 8, 2025Updated last year
- Design of Experiments in Python☆30Aug 12, 2020Updated 5 years ago
- Virtual Pharmacist is a web tool that interprets personal genome for the impact of genetic variation on drug response. It can take varian…☆13Nov 16, 2015Updated 10 years ago
- Restructuring of Essential Oil Database☆13Sep 10, 2019Updated 6 years ago
- Pretty, minimal and fast Fish shell prompt☆11Feb 13, 2017Updated 9 years ago
- Predictors for Blood-Brain Barrier Permeability with resampling strategies based on B3DB database.☆13Aug 12, 2025Updated 9 months ago
- The official PySCeS project source code repository.☆40Mar 20, 2026Updated 2 months ago