Alternatives and similar repositories for troppo:

Users that are interested in troppo are comparing it to the libraries listed below

• SysBioChalmers / RAVEN
  The RAVEN Toolbox for genome scale model reconstruction, curation and analysis.
  ☆107Updated 2 months ago
• cdanielmachado / reframed
  ReFramed: metabolic modeling package
  ☆58Updated 7 months ago
• SysBioChalmers / Human-GEM
  The generic genome-scale metabolic model of Homo sapiens
  ☆107Updated 2 weeks ago
• SysBioChalmers / GECKO
  Toolbox for including enzyme constraints on a genome-scale model.
  ☆70Updated 5 months ago
• jclachance / BOFdat
  Generate biomass objective function stoichiometric coefficients for genome-scale models from experimental data
  ☆27Updated last year
• BioSystemsUM / MEWpy
  Metabolic Engineering Workbench
  ☆39Updated 9 months ago
• opencobra / COBRA.tutorials
  Repository of tutorials for The COBRA Toolbox
  ☆21Updated 2 weeks ago
• opencobra / memote
  memote – the genome-scale metabolic model test suite
  ☆131Updated last year
• klamt-lab / straindesign
  StrainDesign is a python package for the computational design of metabolic networks and based on COBRApy
  ☆41Updated 3 weeks ago
• SysBioChalmers / yeast-GEM
  The consensus GEM for Saccharomyces cerevisiae
  ☆101Updated 4 months ago
• micom-dev / micom
  Python package to study microbial communities using metabolic modeling.
  ☆98Updated 3 weeks ago
• franciscozorrilla / metaGEM
  An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within micro…
  ☆229Updated 7 months ago
• cdanielmachado / carveme
  CarveMe: genome-scale metabolic model reconstruction
  ☆165Updated 6 months ago
• jotech / gapseq
  Informed prediction and analysis of bacterial metabolic pathways and genome-scale networks
  ☆175Updated this week
• pstjohn / d3flux
  D3.js based visualizations of cobrapy metabolic models
  ☆45Updated 5 years ago
• fumiomatsuda / mfapy
  A python toolbox for 13C metabolic flux analysis
  ☆20Updated 6 months ago
• ModelSEED / ModelSEEDpy
  Python package for building and analyzing models using ModelSEED
  ☆22Updated 2 weeks ago
• saezlab / pypath
  Python module for prior knowledge integration. Builds databases of signaling pathways, enzyme-substrate interactions, complexes, annotat…
  ☆138Updated this week
• urmi-21 / pyrpipe
  Reproducible bioinformatics pipelines in python. Import any Unix tool/command in python.
  ☆82Updated 3 years ago
• mmundy42 / mackinac
  Mackinac: A bridge between ModelSEED and COBRApy
  ☆19Updated 6 years ago
• SBRG / cobrame
  A COBRApy extension for genome-scale models of metabolism and expression (ME-models)
  ☆36Updated 6 years ago
• SBRG / bigg_models
  The BiGG Models website server
  ☆81Updated 5 years ago
• SBRG / ssbio
  A Python framework for structural systems biology
  ☆107Updated 4 years ago
• jdbrunner / surfin_fba
  Dynamic FBA for use with COBRApy metabolic models
  ☆10Updated last year
• ModelSEED / ModelSEEDDatabase
  This repository contains the definitive copy of the biochemistry and metadata used to construct models using the ModelSEED/ProbAnno appro…
  ☆59Updated last month
• SBRG / Recon3D
  A 3-Dimensional View of Human Metabolism and Disease
  ☆26Updated 7 years ago
• ThieleLab / CodeBase
  Code depository for papers
  ☆22Updated 3 months ago
• Lattice-Automation / seqfold
  nucleic acid folding
  ☆91Updated 7 months ago
• Merck / deepbgc
  BGC Detection and Classification Using Deep Learning
  ☆139Updated last year
• MetabolicAtlas / standard-GEM
  The standard for open-source GEMs on GitHub
  ☆19Updated last year