idse / imsaneLinks
☆12Updated 3 years ago
Alternatives and similar repositories for imsane
Users that are interested in imsane are comparing it to the libraries listed below
Sorting:
- Detect morphological motifs, such as blebs, filopodia, and lamellipodia, from 3D images of surfaces, particularly images of cell surfaces…☆29Updated last month
- Python package to infer tensions and pressures from 3D microscopy images of embryos and tissues☆11Updated 11 months ago
- Interactive, particle-based physics, chemistry and biology modeling and simulation environment☆23Updated this week
- A napari plugin for filament analysis☆9Updated last year
- Interacting Active Surfaces☆10Updated 2 years ago
- Simulation platform of animal embryogenesis☆20Updated 2 years ago
- Software for Quantifying Mitochondrial Content in Live Cells☆26Updated 11 months ago
- Julia package for the Napari multi-dimensional image viewer☆10Updated 2 years ago
- ☆20Updated this week
- Spheroid models of morphogenesis for the GPU.☆41Updated last year
- Interactive surface analysis in napari for bio-mechanical stress measurement☆18Updated this week
- ☆20Updated last year
- Lectures for a napari training course☆50Updated last year
- An R package for the analysis and interpretation of cell migration tracks.☆13Updated 9 months ago
- 4D reconstruction of developmental trajectories using spherical harmonics☆22Updated 2 months ago
- An Ilastik-like interactive pixel classifier.☆16Updated 9 months ago
- Fast writing of numpy 3d-arrays into HDF5 Fiji/BigDataViewer files.☆35Updated 9 months ago
- Fast reconstruction of spatial networks from bioimages.☆25Updated last month
- LSTree is a digital organoid and lineage tree extraction workflow for light sheet movies.☆18Updated last year
- A napari plugin for zarr backed OME-NGFF images☆33Updated this week
- Project planning and material repository for the 2024 challenge to generate 1 PB of OME-Zarr data☆19Updated last week
- Parts list and build instructions for our high-numerical-aperture lightsheet. Read the publication here: https://andrewgyork.github.io/hi…☆22Updated 11 months ago
- Dataset EXploration & Processing☆32Updated 2 years ago
- Online documentation and reference for CLIJ☆28Updated 4 years ago
- ☆19Updated last year
- napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool☆52Updated 7 months ago
- Commands and Classes for interfacing between Imaris and Fiji☆12Updated 8 months ago
- A Beginner's guide to microscopy, from sample prep to acquisition, image analysis, and data interpretation☆28Updated last week
- segmentation of rod-shaped bacteria☆15Updated 2 years ago
- Process images using SimpleITK in napari☆21Updated last month