☆12Jun 29, 2021Updated 4 years ago
Alternatives and similar repositories for imsane
Users that are interested in imsane are comparing it to the libraries listed below
Sorting:
- Simulation platform of animal embryogenesis☆21Jun 19, 2022Updated 3 years ago
- LSTree is a digital organoid and lineage tree extraction workflow for light sheet movies.☆20Aug 10, 2023Updated 2 years ago
- Interactive, particle-based physics, chemistry and biology modeling and simulation environment☆25Jul 14, 2025Updated 7 months ago
- Graph-based framework to manipulate and analyze cell lineages from cell tracking data☆24Feb 20, 2026Updated last week
- An introduction to OME-Zarr for big bioimaging data☆24Updated this week
- A curated list of scientific image analysis resources and software tools.☆33Feb 4, 2026Updated 3 weeks ago
- Interacting Active Surfaces☆10Jul 12, 2022Updated 3 years ago
- dask empowered fast4dreg☆15Feb 20, 2026Updated last week
- Interactive surface analysis in napari for bio-mechanical stress measurement☆18Feb 23, 2026Updated last week
- 3D Traction Force Microscopy with Python. Calculate cell-generated forces in collagen or other (nonlinear) biopolymer networks.☆16Jul 28, 2025Updated 7 months ago
- Soft Active Matter on Surfaces☆31Apr 16, 2025Updated 10 months ago
- Whole-cell modeling tutorials☆17Jun 26, 2020Updated 5 years ago
- ☆18May 5, 2023Updated 2 years ago
- ☆22Aug 17, 2023Updated 2 years ago
- Project planning and material repository for the 2024 challenge to generate 1 PB of OME-Zarr data☆21Jan 9, 2026Updated last month
- Spheroid models of morphogenesis for the GPU.☆46Oct 12, 2025Updated 4 months ago
- 4D reconstruction of developmental trajectories using spherical harmonics☆23Mar 25, 2025Updated 11 months ago
- MorphoFeatures code and data☆22May 4, 2023Updated 2 years ago
- The ImageJ native launcher☆23Oct 11, 2024Updated last year
- GPU-accelerated simulations of Voronoi and vertex models of cells. Initial version published in Computer Physics Communications: https://…☆24Jul 10, 2025Updated 7 months ago
- Z-stack Depth Colorcode ImageJ FIJI plugin☆25Nov 6, 2025Updated 3 months ago
- Detect morphological motifs, such as blebs, filopodia, and lamellipodia, from 3D images of surfaces, particularly images of cell surfaces…☆31Jan 22, 2026Updated last month
- Software for the reconstruction of multi-view microscopic acquisitions like Selective Plane Illumination Microscopy (SPIM) Data☆32Updated this week
- Block-wise operations for large nD volumes☆45Updated this week
- ☆30Dec 1, 2025Updated 3 months ago
- An epithelium simulation library☆65Feb 4, 2026Updated 3 weeks ago
- Online documentation and reference for CLIJ☆28May 21, 2021Updated 4 years ago
- NGFF-Converter is a GUI application for conversion of bioimage formats into OME-NGFF (Next-Generation File Format) or OME-TIFF☆35Nov 26, 2025Updated 3 months ago
- This project aims at designing an easy self-made ultrasound imaging device. It mainly consists of "Phased-array transducer", "Pulse-contr…☆14Jun 28, 2023Updated 2 years ago
- A python algorithm for tracking cells in 3D deforming organs☆68Nov 13, 2025Updated 3 months ago
- scalable multiscale image pyramids in python☆29Jul 25, 2024Updated last year
- CPM implementation in pure JavaScript☆40Feb 14, 2026Updated 2 weeks ago
- Simulation of Complex Systems - Book - Example codes☆38Sep 11, 2024Updated last year
- The computational platform u-signal3D defines a shape-invariant representation of the spatial scales of molecular organization at the cel…☆11Jan 22, 2026Updated last month
- Copenhagen brain entropy toolbox - a set of matlab tools to compute entropy measures in neuroimaging data☆10Jan 7, 2025Updated last year
- Open source software for multi-modal optical molecular imaging☆11May 19, 2022Updated 3 years ago
- Cells as active droplets☆11Feb 2, 2022Updated 4 years ago
- Generate consensus 3D cells segmentations by combining 2D cell segmentations from any combination of xy, xz, yz views, compatible with ou…☆62Feb 10, 2026Updated 2 weeks ago
- Repository for "The Landscape of Causal Discovery Data: Grounding Causal Discovery in Real-World Applications"☆11May 30, 2025Updated 9 months ago