idse / imsaneLinks
☆12Updated 4 years ago
Alternatives and similar repositories for imsane
Users that are interested in imsane are comparing it to the libraries listed below
Sorting:
- Interactive, particle-based physics, chemistry and biology modeling and simulation environment☆23Updated 5 months ago
- The computational platform u-signal3D defines a shape-invariant representation of the spatial scales of molecular organization at the cel…☆11Updated 8 months ago
- Detect morphological motifs, such as blebs, filopodia, and lamellipodia, from 3D images of surfaces, particularly images of cell surfaces…☆31Updated 8 months ago
- Software for Quantifying Mitochondrial Content in Live Cells☆30Updated 6 months ago
- ☆24Updated 3 months ago
- napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool☆61Updated last year
- Python package to infer tensions and pressures from 3D microscopy images of embryos and tissues☆12Updated 2 months ago
- Project planning and material repository for the 2024 challenge to generate 1 PB of OME-Zarr data☆20Updated 3 months ago
- ☆22Updated 2 years ago
- LSTree is a digital organoid and lineage tree extraction workflow for light sheet movies.☆20Updated 2 years ago
- Accurate segmentation of bacterial microscope images using deep learning synthetically generated image data.☆22Updated 5 months ago
- Lectures for a napari training course☆50Updated 2 years ago
- Image acquisition software for mesoSPIM light-sheet microscopes.☆44Updated 3 weeks ago
- Analysis of data produced by cvapipe for the variance paper☆24Updated last year
- Interacting Active Surfaces☆10Updated 3 years ago
- A platform for compiling, analyzing, and exploring tracking data☆47Updated 4 months ago
- Pydantic models for OME-NGFF☆24Updated 3 months ago
- Fast writing of numpy 3d-arrays into HDF5 Fiji/BigDataViewer files.☆34Updated last year
- 4D reconstruction of developmental trajectories using spherical harmonics☆23Updated 9 months ago
- Pythonic and parallelizable I/O for N-dimensional imaging data with OME metadata☆47Updated 2 weeks ago
- High quality visualization for volumetric image data☆54Updated this week
- Cell tracking and segmentation software☆162Updated this week
- Nellie: Automated organelle segmentation, tracking, and hierarchical feature extraction in 2D/3D live-cell microscopy☆85Updated last month
- Interactive visualization and sharing of cell tracking data in the browser☆44Updated 3 weeks ago
- Interactive surface analysis in napari for bio-mechanical stress measurement☆19Updated 2 weeks ago
- Create 3D/4D animations using a natural language-based syntax☆61Updated 7 months ago
- Process images using SimpleITK in napari☆23Updated 8 months ago
- StarDist plugin for napari☆38Updated last year
- Training resources for Students at Uni Leipzig who want to dive into bio-image data science with Python. The material will develop betwee…☆39Updated last year
- Segmentation method able to detect membrane/nuclei-labelled cells with low signal-to-noise ratio and dense packing in 2D and 3D. Availabl…☆34Updated 2 months ago