Alternatives and similar repositories for imsane:

Users that are interested in imsane are comparing it to the libraries listed below

• DanuserLab / u-shape3D
  Detect morphological motifs, such as blebs, filopodia, and lamellipodia, from 3D images of surfaces, particularly images of cell surfaces…
  ☆29Updated 3 weeks ago
• torressancheza / ias
  Interacting Active Surfaces
  ☆9Updated 2 years ago
• tissue-forge / tissue-forge
  Interactive, particle-based physics, chemistry and biology modeling and simulation environment
  ☆22Updated 3 months ago
• vianamp / MitoGraph
  Software for Quantifying Mitochondrial Content in Live Cells
  ☆26Updated 10 months ago
• hanjinliu / napari-filaments
  A napari plugin for filament analysis
  ☆9Updated last year
• bigdataprocessor / bigdataprocessor2
  ☆20Updated 3 months ago
• JaneliaSciComp / pydantic-ome-ngff
  Pydantic models for OME-NGFF
  ☆23Updated this week
• juliendelile / MECAGEN
  Simulation platform of animal embryogenesis
  ☆20Updated 2 years ago
• gioda / FeARLesS
  4D reconstruction of developmental trajectories using spherical harmonics
  ☆22Updated last month
• nvladimus / npy2bdv
  Fast writing of numpy 3d-arrays into HDF5 Fiji/BigDataViewer files.
  ☆35Updated 8 months ago
• Marc-3d / quickPIV
  ☆19Updated last year
• VirtualEmbryo / foambryo
  Python package to infer tensions and pressures from 3D microscopy images of embryos and tissues
  ☆11Updated 10 months ago
• mkitti / Napari.jl
  Julia package for the Napari multi-dimensional image viewer
  ☆10Updated 2 years ago
• morphometrics / morphometrics
  ☆20Updated last year
• ome / ome2024-ngff-challenge
  Project planning and material repository for the 2024 challenge to generate 1 PB of OME-Zarr data
  ☆19Updated 3 weeks ago
• ome / napari-ome-zarr
  A napari plugin for zarr backed OME-NGFF images
  ☆33Updated this week
• haesleinhuepf / napari-simpleitk-image-processing
  Process images using SimpleITK in napari
  ☆20Updated last week
• haesleinhuepf / the-segmentation-game
  Gamified image segmentation quality estimation
  ☆17Updated last week
• biovoxxel / bv3dbox
  The known BioVoxxel Toolbox functions now improved for 2D and 3D images
  ☆16Updated last week
• fmi-basel / LSTree
  LSTree is a digital organoid and lineage tree extraction workflow for light sheet movies.
  ☆18Updated last year
• cmongis / psfj
  PSFj - Know your microscope fluorescence
  ☆21Updated 5 years ago
• clij / clij-docs
  Online documentation and reference for CLIJ
  ☆28Updated 3 years ago
• AndrewGYork / high_na_single_objective_lightsheet
  Parts list and build instructions for our high-numerical-aperture lightsheet. Read the publication here: https://andrewgyork.github.io/hi…
  ☆22Updated 10 months ago
• saalfeldlab / n5-ij
  ImageJ convenience layer for N5
  ☆17Updated last month
• abcucberkeley / cpp-zarr
  ☆16Updated 3 weeks ago
• COSC-Lab / napari-fast4dreg
  dask empowered fast4dreg
  ☆11Updated 5 months ago
• BIOP / EasyXT-FIJI
  Commands and Classes for interfacing between Imaris and Fiji
  ☆12Updated 7 months ago
• VeraPancaldiLab / tysserand
  Fast reconstruction of spatial networks from bioimages.
  ☆25Updated 2 weeks ago
• haesleinhuepf / devbio-napari
  ☆49Updated last week
• weigertlab / napari-trackastra
  napari plugin for trackastra
  ☆13Updated 6 months ago