A basis for a napari plugin for manually correcting cell segmentation in 3D (z, y, x) or 4D (t, z, y, x) (virtual) arrays.
☆10Mar 6, 2026Updated last month
Alternatives and similar repositories for napari-segmentation-toolbox
Users that are interested in napari-segmentation-toolbox are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Graph-based framework to manipulate and analyze cell lineages from cell tracking data☆24Updated this week
- An introduction to OME-Zarr for big bioimaging data☆26Updated this week
- A collection of Image Processing and Analysis (IPA) functions used at the Facility for Advanced Imaging and Microscopy (FAIM)☆20Updated this week
- 🔬 MCP server for AI-powered napari control. Connect Claude, ChatGPT, Cursor, and other LLMs to napari for interactive image analysis. Pe…☆33Mar 25, 2026Updated 3 weeks ago
- Block-wise operations for large nD volumes☆46Updated this week
- Serverless GPU API endpoints on Runpod - Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- A napari plugin for zarr backed OME-NGFF images☆46Updated this week
- Reference implementation of the Graph Exchange File Format☆39Updated this week
- Multi-Object Tracking with Integer Linear Equations☆39Updated this week
- serve Zarr datasets via HTTP☆31Jun 12, 2023Updated 2 years ago
- Paint segmentations directly to on-disk/remote zarr arrays☆16Mar 25, 2026Updated 3 weeks ago
- ☆22Aug 17, 2023Updated 2 years ago
- 3-day workshop to teach biologists how to train and process deep convolutional neural networks for image segmentation through a comprehen…☆12May 30, 2022Updated 3 years ago
- "Defragmentation: bringing BioImage Analysts to the cloud!” training school for the new generation of bioimage analysts. Topics: workflow…☆15Apr 30, 2023Updated 2 years ago
- Cell tracking and segmentation software☆175Apr 10, 2026Updated last week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Project planning and material repository for the 2024 challenge to generate 1 PB of OME-Zarr data☆21Jan 9, 2026Updated 3 months ago
- napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool☆63Oct 27, 2024Updated last year
- ☆38Mar 9, 2026Updated last month
- Collection of connectomic papers and datasets.☆16Dec 25, 2023Updated 2 years ago
- ☆14Jun 4, 2023Updated 2 years ago
- The 2025 version of cellPLATO☆16Jan 23, 2026Updated 2 months ago
- Guide to python package development for scientists☆27Mar 30, 2026Updated 2 weeks ago
- GPU-accelerated general purpose image processing and image analysis in napari☆36May 1, 2025Updated 11 months ago
- GUI interface between napari and micromanager powered by pymmcore-plus and pymmcore-widgets☆76Apr 6, 2026Updated last week
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- scalable multiscale image pyramids in python☆29Jul 25, 2024Updated last year
- Main tasks for the Fractal analytics platform☆25Updated this week
- ☆16Apr 10, 2026Updated last week
- GPU-based 3D non-rigid volumetric registration☆47Aug 26, 2025Updated 7 months ago
- A 3D interactivity toolbox for napari☆37Jul 8, 2025Updated 9 months ago
- OBS plugin core (SE.Live)☆15Apr 9, 2026Updated last week
- Napari plugin for custom analysis and visualization of lattice lightsheet and Oblique Plane Microscopy data. The plugin is optimized for …☆14Apr 13, 2026Updated last week
- Simple, fast-loading, n-dimensional array viewer with minimal dependencies.☆90Apr 8, 2026Updated last week
- Resources for teaching/preparing to teach bioimage analysis☆61Updated this week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Annotation of filaments and other curvilinear structures in 3D.☆12Oct 9, 2023Updated 2 years ago
- Speed up coding/extending image analysis in Python.☆37Jan 20, 2026Updated 2 months ago
- ☆37Mar 22, 2024Updated 2 years ago
- Registration to BrainGlobe atlases in napari using Elastix☆30Apr 8, 2026Updated last week
- Resources for and by the #codingForChemists Discord community!☆10Jun 18, 2023Updated 2 years ago
- Generate multifunctional and macro recordable GUIs from Python classes☆45Apr 2, 2026Updated 2 weeks ago
- A stable diffusion demo for napari☆11Dec 15, 2023Updated 2 years ago