A basis for a napari plugin for manually correcting cell segmentation in 3D (z, y, x) or 4D (t, z, y, x) (virtual) arrays.
☆10Mar 6, 2026Updated 4 months ago
Alternatives and similar repositories for napari-segmentation-toolbox
Users that are interested in napari-segmentation-toolbox are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- dask empowered fast4dreg☆17Mar 11, 2026Updated 4 months ago
- ☆26Updated this week
- Automated batch processing of cell and tissue microscopy image data in Napari☆22Updated this week
- Graph-based framework to manipulate and analyze cell lineages from cell tracking data☆24Updated this week
- Utilities for computing common accuracy metrics on cell tracking solutions with ground truth☆41Updated this week
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- A recast of cell segmentation models built on the Burn deep learning framework.☆23Jul 22, 2026Updated last week
- Modern Bio-Formats wrapper with clean lazy Python API☆23Jun 25, 2026Updated last month
- A Python toolbox for aligning / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.☆124Jul 21, 2026Updated last week
- A collection of Image Processing and Analysis (IPA) functions used at the Facility for Advanced Imaging and Microscopy (FAIM)☆20Jul 20, 2026Updated last week
- serve Zarr datasets via HTTP☆32Jun 12, 2023Updated 3 years ago
- Data Inspection Plugin, designed to streamline file navigation and enhance the efficiency of data inspection.☆15Dec 22, 2025Updated 7 months ago
- Paint segmentations directly to on-disk/remote zarr arrays☆16Mar 25, 2026Updated 4 months ago
- CUDA-accelerated 3D BioImage Computing (ICCV BIC 2025)☆31Updated this week
- Deep-learning library for image restoration.☆147Updated this week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Multi-Object Tracking with Integer Linear Equations☆39Jul 21, 2026Updated last week
- 3-day workshop to teach biologists how to train and process deep convolutional neural networks for image segmentation through a comprehen…☆13May 30, 2022Updated 4 years ago
- ☆21Aug 17, 2023Updated 2 years ago
- Source materials for a textbook on AI in Microscopy☆16Jul 14, 2026Updated 2 weeks ago
- "Defragmentation: bringing BioImage Analysts to the cloud!” training school for the new generation of bioimage analysts. Topics: workflow…☆15Apr 30, 2023Updated 3 years ago
- ☆39May 29, 2026Updated 2 months ago
- Project planning and material repository for the 2024 challenge to generate 1 PB of OME-Zarr data☆21May 11, 2026Updated 2 months ago
- Collection of connectomic papers and datasets.☆16Dec 25, 2023Updated 2 years ago
- napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool☆66Oct 27, 2024Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆14Jun 4, 2023Updated 3 years ago
- Block-wise operations for large nD volumes☆45Updated this week
- The 2025 version of cellPLATO☆16Jan 23, 2026Updated 6 months ago
- GPU-accelerated general purpose image processing and image analysis in napari☆36May 1, 2025Updated last year
- ngio is a Python library to streamline OME-Zarr image analysis workflows.☆50Updated this week
- GUI interface between napari and micromanager powered by pymmcore-plus and pymmcore-widgets☆79Jul 6, 2026Updated 3 weeks ago
- A napari plugin for zarr backed OME-NGFF images☆53Jul 21, 2026Updated last week
- GIve easy, high-level access to ome-zarr fileset☆24Sep 22, 2025Updated 10 months ago
- Basic example of using OME-Zarr in a Nextflow pipeline☆21Jul 15, 2025Updated last year
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Single-cell spatial omics analysis that makes you happy!☆71Jul 20, 2026Updated last week
- scalable multiscale image pyramids in python☆29Jul 25, 2024Updated 2 years ago
- Reference implementation of the Graph Exchange File Format☆42Updated this week
- Main tasks for the Fractal analytics platform☆27Updated this week
- An introduction to OME-Zarr for big bioimaging data☆27Jul 1, 2026Updated 3 weeks ago
- Resources for teaching/preparing to teach bioimage analysis☆63Updated this week
- A 3D interactivity toolbox for napari☆37Jul 8, 2025Updated last year