AllenInstitute / biofile-finderView external linksLinks
An open-use web application created for easy access, collaboration, and sharing of datasets through rich metadata search, filter, sort, and direct viewing in common industry applications or in our web-based 3D Volume Viewer.
☆15Updated this week
Alternatives and similar repositories for biofile-finder
Users that are interested in biofile-finder are comparing it to the libraries listed below
Sorting:
- Create web-based OME-Zarr galleries☆22Nov 6, 2025Updated 3 months ago
- A multi-dimensional spatial image data structure for scientific Python.☆44Aug 8, 2025Updated 6 months ago
- A cross platform version of Bio library & program. Bio is a library & program for annotating, & editing various microscopy imaging format…☆14Updated this week
- An introduction to OME-Zarr for big bioimaging data☆24Updated this week
- A plugin for exporting RDF from OMERO☆15Dec 3, 2025Updated 2 months ago
- ☆24Aug 27, 2020Updated 5 years ago
- A pipeline for processing Molecular Cartography data from Resolve Bioscience (combinatorial FISH)☆13Nov 20, 2025Updated 2 months ago
- ☆14Updated this week
- Reading HDF5 files with Zarr☆11Oct 5, 2021Updated 4 years ago
- A lean and kind Open Microscopy Environment (OME) Next Generation File Format (NGFF) Zarr implementation.☆63Updated this week
- Interface to the Bioformats Java library☆13Dec 19, 2025Updated last month
- Generate a multiscale, chunked, multi-dimensional spatial image data structure that can serialized to OME-NGFF.☆55Nov 13, 2025Updated 3 months ago
- Schema.org Data Models for HTAN☆15Sep 4, 2025Updated 5 months ago
- serve Zarr datasets via HTTP☆31Jun 12, 2023Updated 2 years ago
- An application to display spatial and single-cell experiment data. Built in React, on the Vitessce framework.☆14Nov 3, 2025Updated 3 months ago
- Streaming directly to Zarr on the file system or S3☆27Updated this week
- ☆28Updated this week
- GPU-based 3D non-rigid volumetric registration☆43Aug 26, 2025Updated 5 months ago
- A writer and reader for NGFF OME-Zarr datasets☆14Nov 2, 2021Updated 4 years ago
- A draft specification for the nifti-zarr format☆16Dec 5, 2025Updated 2 months ago
- An implementation of the Zarr storage format specification for chunked & compressed multidimensional arrays.☆24Apr 22, 2025Updated 9 months ago
- litemind is a Python library designed to empower developers to build sophisticated conversational agents and tools. It provides a flexibl…☆18Updated this week
- GIve easy, high-level access to ome-zarr fileset☆22Sep 22, 2025Updated 4 months ago
- ☆20Nov 12, 2025Updated 3 months ago
- Get Your Brain Together Neuroimage Registration Workshops and Hackathons☆21Nov 14, 2024Updated last year
- A fully scalable robust image feature extraction library.☆28Updated this week
- Python API and Jupyter widget for Vitessce☆61Feb 5, 2026Updated last week
- A minimal Zarr image viewer based on Viv.☆181Feb 1, 2026Updated last week
- A nextflow based tool that wraps bfconvert and bioformats2raw to convert image data collections to OME-TIFF and OME-Zarr, respectively, i…☆25Mar 14, 2025Updated 11 months ago
- Pydantic models for OME-NGFF☆24Sep 14, 2025Updated 4 months ago
- TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…☆66Dec 2, 2025Updated 2 months ago
- Spatialproteomics is a light weight wrapper around xarray with the intention to facilitate the data exploration and analysis of highly mu…☆39Updated this week
- ☆26Jul 11, 2024Updated last year
- native Python dataclasses for the OME data model☆65Feb 2, 2026Updated last week
- Loading and handling microscopy data in blender☆148Nov 8, 2025Updated 3 months ago
- Fusing image tiles with dask array's map_blocks☆31Feb 27, 2024Updated last year
- ImageJ / Fiji macro to automatically export Leica LIF file as individual images (batch mode available)☆11Feb 15, 2022Updated 3 years ago
- A dataset for loading zarr files to be used in machine learning training pipelines☆34Jan 5, 2026Updated last month
- A napari plugin for zarr backed OME-NGFF images☆43Jan 19, 2026Updated 3 weeks ago