AllenInstitute / biofile-finderLinks
An open-use web application created for easy access, collaboration, and sharing of datasets through rich metadata search, filter, sort, and direct viewing in common industry applications or in our web-based 3D Volume Viewer.
☆12Updated this week
Alternatives and similar repositories for biofile-finder
Users that are interested in biofile-finder are comparing it to the libraries listed below
Sorting:
- Tools for distributed alignment of massive images☆84Updated 3 weeks ago
- Multiple file format reading directly into napari using pure Python☆37Updated 11 months ago
- A lean and kind Open Microscopy Environment (OME) Next Generation File Format (NGFF) Zarr implementation.☆45Updated this week
- Image reading, metadata management, and image writing for Microscopy images in Python☆92Updated last week
- "Defragmentation TS2: bringing BioImage Analysts to the cloud!” training school for the new generation of bioimage analysts. Topics: work…☆10Updated 2 years ago
- ☆23Updated 2 weeks ago
- A module with convenience functions for writing Python code that interacts with OMERO.☆45Updated last week
- ☆51Updated 2 months ago
- Python libraries for loading, running and packaging bioimage.io models☆32Updated 2 weeks ago
- Accurate and efficient spot detection for microscopy data☆91Updated last week
- Browse your OMERO database from within napari.☆38Updated last week
- GIve easy, high-level access to ome-zarr fileset☆17Updated last month
- How to use Aligning Big Brains and Atlases with Python☆15Updated 2 years ago
- Running compute-intense parts of BigStitcher distributed☆26Updated this week
- An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)☆17Updated 2 months ago
- A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…☆27Updated 2 months ago
- ☆12Updated last year
- StarDist plugin for napari☆38Updated 10 months ago
- A napari plugin for clustering objects according to their properties.☆87Updated this week
- Benchmarking Large Language Models for Bio-Image Analysis Code Generation☆23Updated 7 months ago
- MultiModal Big Image Data Sharing and Exploration☆15Updated 2 years ago
- ☆35Updated 3 weeks ago
- LSTree is a digital organoid and lineage tree extraction workflow for light sheet movies.☆18Updated last year
- Acquire: a multi-camera video streaming software focusing on microscopy☆21Updated 8 months ago
- This repository hosts notebooks, information and data for the Quantitative Bio-Image Analysis with Python Course 2022.☆15Updated 2 years ago
- ☆18Updated 3 years ago
- PoL Bioimage Analysis Training School: GPU-Accelerated Image Analysis Track☆28Updated last year
- ☆15Updated 2 years ago
- napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool☆54Updated 8 months ago
- ImageJ / Fiji macro to automatically export Leica LIF file as individual images (batch mode available)☆11Updated 3 years ago