An open-use web application created for easy access, collaboration, and sharing of datasets through rich metadata search, filter, sort, and direct viewing in common industry applications or in our web-based 3D Volume Viewer.
☆18Jun 9, 2026Updated this week
Alternatives and similar repositories for biofile-finder
Users that are interested in biofile-finder are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A multi-dimensional spatial image data structure for scientific Python.☆44Aug 8, 2025Updated 10 months ago
- A plugin for exporting RDF from OMERO☆16Feb 27, 2026Updated 3 months ago
- ☆24Aug 27, 2020Updated 5 years ago
- ☆15Updated this week
- An introduction to OME-Zarr for big bioimaging data☆27Jun 2, 2026Updated 2 weeks ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Create web-based OME-Zarr galleries☆25May 26, 2026Updated 2 weeks ago
- A cross platform version of Bio library & program. Bio is a library & program for annotating, & editing various microscopy imaging format…☆14May 22, 2026Updated 3 weeks ago
- serve Zarr datasets via HTTP☆32Jun 12, 2023Updated 3 years ago
- Generate a multiscale, chunked, multi-dimensional spatial image data structure that can serialized to OME-NGFF.☆56Nov 13, 2025Updated 7 months ago
- Streaming directly to Zarr on the file system or S3☆29Jun 8, 2026Updated last week
- ☆19Nov 12, 2025Updated 7 months ago
- A pipeline for processing Molecular Cartography data from Resolve Bioscience (combinatorial FISH)☆13Apr 30, 2026Updated last month
- GIve easy, high-level access to ome-zarr fileset☆22Sep 22, 2025Updated 8 months ago
- GPU-based 3D non-rigid volumetric registration☆49Aug 26, 2025Updated 9 months ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- A lean and kind Open Microscopy Environment (OME) Next Generation File Format (NGFF) Zarr implementation.☆71Updated this week
- Reading HDF5 files with Zarr☆12Oct 5, 2021Updated 4 years ago
- Get Your Brain Together Neuroimage Registration Workshops and Hackathons☆22Nov 14, 2024Updated last year
- A fully scalable robust image feature extraction library.☆28Jun 5, 2026Updated last week
- Brain flatmaps generation☆11Oct 5, 2022Updated 3 years ago
- Fusing image tiles with dask array's map_blocks☆31Feb 27, 2024Updated 2 years ago
- ☆28Updated this week
- A writer and reader for NGFF OME-Zarr datasets☆14Nov 2, 2021Updated 4 years ago
- A fast and open-source scientific image processing and algorithm library.☆15Jun 4, 2026Updated last week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A nextflow based tool that wraps bfconvert and bioformats2raw to convert image data collections to OME-TIFF and OME-Zarr, respectively, i…☆31Mar 14, 2025Updated last year
- Python API and Jupyter widget for Vitessce☆67Updated this week
- Automated deep learning based segmentation of multiple sclerosis lesions on MRI☆15Sep 6, 2022Updated 3 years ago
- An implementation of the Zarr storage format specification for chunked & compressed multidimensional arrays.☆26Apr 22, 2025Updated last year
- ☆10May 26, 2021Updated 5 years ago
- A minimal Zarr image viewer based on Viv.☆195Updated this week
- SCIFIO ImageIO plugin for ITK☆16Apr 23, 2026Updated last month
- A napari plugin for zarr backed OME-NGFF images☆52May 28, 2026Updated 2 weeks ago
- A relabeling tool for tiled segmentation with Dask☆17Sep 24, 2024Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Schema.org Data Models for HTAN☆15Sep 4, 2025Updated 9 months ago
- An application to display spatial and single-cell experiment data. Built in React, on the Vitessce framework.☆15Nov 3, 2025Updated 7 months ago
- TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…☆71Dec 2, 2025Updated 6 months ago
- Spatialproteomics is a light weight wrapper around xarray with the intention to facilitate the data exploration and analysis of highly mu…☆44Updated this week
- native Python dataclasses for the OME data model☆67Apr 2, 2026Updated 2 months ago
- A tutorial of classical shape analysis methods☆11Nov 25, 2023Updated 2 years ago
- Interface to the Bioformats Java library☆15Feb 17, 2026Updated 3 months ago