GuignardLab / tapenadeLinks
☆13Updated last month
Alternatives and similar repositories for tapenade
Users that are interested in tapenade are comparing it to the libraries listed below
Sorting:
- ☆15Updated last month
- A minimal dependency napari plugin giving access to scikit-image functions☆23Updated 4 months ago
- A short course exploring several fun and useful notebooks and Napari widgets for deep learning with SAM, Cellpose, Stardist and friends.☆18Updated last month
- A module with convenience functions for writing Python code that interacts with OMERO.☆46Updated last month
- ☆51Updated 8 months ago
- ☆12Updated last year
- Browse your OMERO database from within napari.☆40Updated last week
- PoL Bioimage Analysis Training School: GPU-Accelerated Image Analysis Track☆28Updated last year
- Multiple file format reading directly into napari using pure Python☆39Updated 3 months ago
- A basis for a napari plugin for manually correcting cell segmentation in 3D (z, y, x) or 4D (t, z, y, x) (virtual) arrays.☆11Updated last month
- ☆12Updated 4 months ago
- Guides and code for 3D nuclear instance segmentation☆22Updated last month
- This repository hosts notebooks, information and data for the Quantitative Bio-Image Analysis with Python Course 2022.☆16Updated 3 years ago
- A Python-based tool for parallelized conversion of image datasets from various formats to OME-Zarr, with support for distributed processi…☆17Updated this week
- A place to collect information used in lectures, demos, workshops, etc.☆17Updated last year
- ZELDA: a 3D Image Segmentation and Parent to Child relation plugin for microscopy image analysis in napari☆25Updated last month
- Accurate and efficient spot detection for microscopy data☆114Updated last week
- ☆20Updated 3 months ago
- A Board Game to teach co-localization analysis☆13Updated last year
- dask empowered fast4dreg☆15Updated last year
- Ngio is a Python library to streamline OME-Zarr image analysis workflows.☆37Updated last week
- ☆36Updated last year
- FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets☆29Updated last month
- Visualizing feature measurements on label images in napari☆10Updated last year
- A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…☆30Updated 8 months ago
- A toolbox for registering / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.☆101Updated last week
- Track and lineage visualization with btrack and Napari☆45Updated 3 months ago
- ☆25Updated 2 years ago
- An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)☆20Updated 2 months ago
- GIve easy, high-level access to ome-zarr fileset☆22Updated 3 months ago