Scientific image analysis resources and software tools.
☆49Oct 9, 2026Updated last week
Alternatives and similar repositories for awesome-scientific-image-analysis
Users that are interested in awesome-scientific-image-analysis are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ngio is a Python library to streamline OME-Zarr image analysis workflows.☆53Updated this week
- An introduction to OME-Zarr for big bioimaging data☆28Oct 1, 2026Updated 2 weeks ago
- ☆15Updated this week
- A Python-based tool for parallelized conversion of image datasets from various formats to OME-Zarr, with support for distributed processi…☆32Updated this week
- ☆27Sep 11, 2026Updated last month
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Graph-based framework to manipulate and analyze cell lineages from cell tracking data☆24Updated this week
- Automated batch processing of cell and tissue microscopy image data in Napari☆23Oct 1, 2026Updated 2 weeks ago
- A python package for fitting splines.☆24Oct 6, 2026Updated last week
- ☆17Aug 3, 2026Updated 2 months ago
- ☆24Aug 26, 2026Updated last month
- Modern Bio-Formats wrapper with clean lazy Python API☆24Jun 25, 2026Updated 3 months ago
- A minimal Python package for reading, writing and validating OME-Zarr (meta)data☆39Oct 10, 2026Updated last week
- Basic example of using OME-Zarr in a Nextflow pipeline☆21Jul 15, 2025Updated last year
- FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets☆31Updated this week
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- PoL Bioimage Analysis Training School: GPU-Accelerated Image Analysis Track☆28Jun 5, 2024Updated 2 years ago
- python tools for BigDataViewer☆23Jul 2, 2026Updated 3 months ago
- A napari plugin for zarr backed OME-NGFF images☆56Updated this week
- A short course exploring several fun and useful notebooks and Napari widgets for deep learning with SAM, Cellpose, Stardist and friends.☆19Dec 9, 2025Updated 10 months ago
- A web-based resource for the scientific visualization community to enhance reproducibility and facilitate testing and development of OME-…☆26Feb 14, 2026Updated 8 months ago
- Scientific Dataset Quality Control and Data Exploration Tool☆29Updated this week
- Interprocess environment manager 🧊☆18Oct 9, 2026Updated last week
- An open-use web application created for easy access, collaboration, and sharing of datasets through rich metadata search, filter, sort, a…☆22Oct 9, 2026Updated last week
- A minimal dependency napari plugin giving access to scikit-image functions☆25Oct 5, 2026Updated last week
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- This repository provides a collection of tools to simplify reading CZI (Carl Zeiss Image) pixel and metadata in Python.☆22Updated this week
- Generate a multiscale, chunked, multi-dimensional spatial image data structure that can serialized to OME-NGFF.☆58Nov 13, 2025Updated 11 months ago
- A napari plugin for stitching large multi-positioning datasets in 2/3D+t using multiview-stitcher☆19Jul 26, 2026Updated 2 months ago
- ☆15Updated this week
- An ImageJ/FIJI plugin for multi-channel Hyperstack alignment (registration)☆13Updated this week
- A napari plugin for making image annotation using feature space of vision transformers and Random Forest classifier☆23Nov 24, 2025Updated 10 months ago
- Accurate and efficient spot detection for microscopy data☆144Jun 8, 2026Updated 4 months ago
- Image reading, metadata management, and image writing for Microscopy images in Python☆132Sep 30, 2026Updated 2 weeks ago
- Segment Anything Model 2 C++ ONNX Wrapper☆21May 13, 2026Updated 5 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Rust extension module for FIJI-like colormapping and channel blending☆21Jun 24, 2026Updated 3 months ago
- Deep-learning library for image restoration.☆154Updated this week
- A template repo used to make new napari plugins☆42Oct 1, 2026Updated 2 weeks ago
- A Python toolbox for aligning / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.☆135Sep 6, 2026Updated last month
- A lean and kind Open Microscopy Environment (OME) Next Generation File Format (NGFF) Zarr implementation.☆74Updated this week
- serve Zarr datasets via HTTP☆32Jun 12, 2023Updated 3 years ago
- GIve easy, high-level access to ome-zarr fileset☆24Sep 22, 2025Updated last year