nygenome / Lancet2
v2.x of the microassembly based somatic variant caller
☆20Updated 2 weeks ago
Alternatives and similar repositories for Lancet2:
Users that are interested in Lancet2 are comparing it to the libraries listed below
- Tools to gather evidence for structural variation via breakpoint detection.☆19Updated last month
- A set of tools to annotate VCF files with expression and readcount data☆29Updated last week
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer☆21Updated 4 years ago
- Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes☆28Updated 8 months ago
- ☆21Updated last month
- Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA☆27Updated 9 months ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆26Updated 6 years ago
- Location of public benchmarking; primarily final results☆18Updated 3 weeks ago
- Unfazed by genomic variant phasing☆26Updated 9 months ago
- Structural variant pipeline☆17Updated 4 years ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated last month
- ☆20Updated last year
- add true-negative SVs from a population callset to a truth-set.☆15Updated 2 years ago
- Population-wide Deletion Calling☆35Updated 6 months ago
- DRAGEN Tumor/Normal workflow post-processing☆22Updated last year
- iAnnotateSV is a Python library and command-line software toolkit to annotate and visualize structural variants detected from Next Genera…☆16Updated last week
- Samwell: a python package for using genomic files... well☆20Updated 2 years ago
- Structural Variation breakpoint discovery via adaptive learning☆15Updated last year
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆17Updated 4 years ago
- Filter and prioritize fusion calls☆20Updated 5 months ago
- overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites☆33Updated 2 weeks ago
- Structural variant (SV) analysis tools☆35Updated 8 months ago
- Runs a combination of tools to generate structural variant calls on short-read whole-genome sequencing data☆20Updated 3 years ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year
- Copy Number Variation Detection In Next-generation sequencing Gene panels was designed for small (single-exon) copy number variation (CNV…☆21Updated 4 years ago
- ☆19Updated 3 years ago
- CADD-SV – a framework to score the effect of structural variants☆14Updated last month
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆24Updated 8 years ago
- Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses☆31Updated 3 years ago
- Integrative analysis of complex structural variants☆21Updated 4 years ago