Alternatives and similar repositories for Lancet2

Users that are interested in Lancet2 are comparing it to the libraries listed below

• griffithlab / VAtools
  A set of tools to annotate VCF files with expression and readcount data
  ☆29Updated 6 months ago
• rdemolgen / SavvySuite
  Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes
  ☆31Updated last month
• vpc-ccg / svict
  Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA
  ☆29Updated last year
• sigven / cacao
  Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer
  ☆21Updated 4 years ago
• langmead-lab / reference_flow
  Reducing reference bias using multiple population reference genomes
  ☆33Updated last year
• ssadedin / ximmer
  Ximmer is a system for CNV calling on exome and targeted genomic sequencing
  ☆19Updated 2 weeks ago
• HudsonAlpha / CSL_public_benchmark
  Location of public benchmarking; primarily final results
  ☆18Updated 7 months ago
• lh3 / pre-pe
  Preprocessing paired-end reads produced with experiment-specific protocols
  ☆32Updated 7 years ago
• czc / nb_distribution
  novoBreak: local assembly for breakpoint detection in cancer genomes
  ☆25Updated 7 years ago
• fulcrumgenomics / fgsv
  Tools to gather evidence for structural variation via breakpoint detection.
  ☆19Updated 5 months ago
• dellytools / sansa
  Structural variant VCF annotation, duplicate removal and comparison
  ☆33Updated 6 months ago
• HurlesGroupSanger / DeNovoWEST
  ☆21Updated this week
• brwnj / covviz
  Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata
  ☆58Updated 3 years ago
• jts / bri
  Bam Read Index - Extract alignments from a bam file by readname
  ☆27Updated last year
• jbelyeu / unfazed
  Unfazed by genomic variant phasing
  ☆27Updated last year
• myriad-opensource / samwell
  Samwell: a python package for using genomic files... well
  ☆20Updated 3 years ago
• vpc-ccg / calib
  Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.
  ☆39Updated 2 years ago
• telatin / covtobed
  ⛰ covtobed | Convert the coverage track from a BAM file into a BED file
  ☆44Updated 3 months ago
• rhshah / iAnnotateSV
  iAnnotateSV is a Python library and command-line software toolkit to annotate and visualize structural variants detected from Next Genera…
  ☆16Updated 3 weeks ago
• YingZhou001 / Immuannot
  Immuological gene typing and annotation for genome assembly
  ☆38Updated 6 months ago
• dermasugita / Viola-SV
  Viola is a flexible and powerful python package designed specifically for analysis of genomic structural variant (SV) signatures.
  ☆26Updated last year
• HurlesGroupSanger / indelible
  Structural Variation breakpoint discovery via adaptive learning
  ☆16Updated 2 years ago
• HTGenomeAnalysisUnit / SCE-VCF
  Sample Contamination Estimate from VCF
  ☆21Updated 10 months ago
• J35P312 / FindSV
  Structural variant pipeline
  ☆17Updated 5 years ago
• polyactis / Accucopy
  Accucopy is a computational method that infers Allele-Specific Copy Number alterations from low-coverage low-purity tumor sequencing data…
  ☆17Updated last year
• kehrlab / PopDel
  Population-wide Deletion Calling
  ☆35Updated 5 months ago
• bioinform / breakseq2
  BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants
  ☆25Updated 9 years ago
• ccbiolab / svpluscnv
  Integrative analysis of complex structural variants
  ☆22Updated 5 years ago
• DecodeGenetics / popSTR
  PopSTR - A Population based microsatellite genotyper
  ☆33Updated last year
• smithlabcode / abismal
  Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.
  ☆19Updated last month