bioinform / neusomaticLinks
NeuSomatic: Deep convolutional neural networks for accurate somatic mutation detection
☆170Updated 3 years ago
Alternatives and similar repositories for neusomatic
Users that are interested in neusomatic are comparing it to the libraries listed below
Sorting:
- Clairvoyante: a multi-task convolutional deep neural network for variant calling in Single Molecule Sequencing☆171Updated last year
- Deep-learning Augmented RNA-seq analysis of Transcript Splicing☆114Updated last year
- Estimating tumor fraction in cell-free DNA from ultra-low-pass whole genome sequencing.☆185Updated last year
- MuTect -- Accurate and sensitive cancer mutation detection☆97Updated 2 years ago
- Precision HLA typing from next-generation sequencing data☆202Updated last year
- An ensemble approach to accurately detect somatic mutations using SomaticSeq☆197Updated 3 weeks ago
- circular RNA analysis toolset☆85Updated 11 months ago
- CADD scripts release for offline scoring. For more information about CADD, please visit our website☆84Updated 2 months ago
- AmpliconArchitect (AA) is a tool to identify one or more connected genomic regions which have simultaneous copy number amplification and …☆149Updated last year
- Annotates variants in MAF with OncoKB annotation.☆133Updated 3 weeks ago
- predicting expression effects of human genome variants ab initio from sequence☆128Updated 6 months ago
- ☆116Updated last year
- ☆73Updated 4 years ago
- AQUAS TF and histone ChIP-seq pipeline☆109Updated 3 years ago
- ATAC-seq and DNase-seq processing pipeline☆166Updated 3 years ago
- ENCODE Uniform processing pipeline for ChIP-seq☆124Updated 5 years ago
- TADbit is a complete Python library to deal with all steps to analyze, model and explore 3C-based data. With TADbit the user can map FAST…☆105Updated 2 months ago
- Building classifiers using cancer transcriptomes across 33 different cancer-types☆119Updated 6 years ago
- tools for adding mutations to existing .bam files, used for testing mutation callers☆244Updated 9 months ago
- Finder of Somatic Fusion Genes in RNA-seq data☆146Updated 2 years ago
- A short tutorial on how to use RSEM☆137Updated 5 years ago
- Workshop on measuring, analyzing, and visualizing the 3D genome with Hi-C data.☆202Updated 7 years ago
- Annotation-free quantification of RNA splicing. Yang I. Li, David A. Knowles, Jack Humphrey, Alvaro N. Barbeira, Scott P. Dickinson, Hae …☆222Updated last year
- cfDNApipe: A comprehensive quality control and analysis pipeline for cell-free DNA high-throughput sequencing data☆68Updated 2 years ago
- SigProfilerExtractor allows de novo extraction of mutational signatures from data generated in a matrix format. The tool identifies the n…☆163Updated this week
- deep residual neural network for classifying the pathogenicity of missense mutations.☆112Updated 3 years ago
- [Deprecated, see https://github.com/antigenomics/mirpy and other tools @antigenomics] Post-analysis of immune repertoire sequencing data☆140Updated last year
- ☆153Updated 2 years ago
- ☆117Updated last year
- Copy number calling and variant classification using targeted short read sequencing☆137Updated 3 months ago