brentp / slivarLinks
genetic variant expressions, annotation, and filtering for great good.
☆268Updated 3 weeks ago
Alternatives and similar repositories for slivar
Users that are interested in slivar are comparing it to the libraries listed below
Sorting:
- fast sample-swap and relatedness checks on BAMs/CRAMs/VCFs/GVCFs... "like damn that is one smart wine guy"☆298Updated last month
- structural variant calling and genotyping with existing tools, but, smoothly.☆261Updated last year
- goleft is a collection of bioinformatics tools distributed under MIT license in a single static binary☆224Updated 3 months ago
- Annotation and Ranking of Structural Variation☆278Updated 3 months ago
- GRIDSS: the Genomic Rearrangement IDentification Software Suite☆280Updated 7 months ago
- The nimble & robust variant annotator☆188Updated last year
- annotate a VCF with other VCFs/BEDs/tabixed files☆392Updated 4 months ago
- A tool for estimating repeat sizes☆202Updated last year
- Tools for processing and analyzing structural variants.☆156Updated 3 years ago
- Workflows for germline short variant discovery with GATK4☆139Updated 4 years ago
- a tool for CNV discovery and genotyping from depth-of-coverage by mapped reads☆232Updated 3 years ago
- ☆82Updated 7 years ago
- ABRA2☆95Updated 3 years ago
- GATK RNA-Seq Variant Calling in Nextflow☆137Updated 3 years ago
- Detect and visualize target mutations by scanning FastQ files directly☆157Updated 3 years ago
- A structural variation pipeline for short-read sequencing☆200Updated this week
- Variant calling and somatic mutation/CNV detection for next-generation sequencing data☆165Updated 2 years ago
- A tool set for short variant discovery in genetic sequence data.☆204Updated 4 years ago
- BEDOPS: high-performance genomic feature operations☆356Updated 8 months ago
- software tools for haplotype assembly from sequence data☆226Updated 11 months ago
- VarDict☆201Updated 2 years ago
- Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data☆175Updated last year
- This repository contains data indexes from NIST's Genome in a Bottle project.☆262Updated 2 years ago
- Various algorithms for analysing genomics data☆261Updated last week
- Structural variation and indel detection by local assembly☆250Updated 3 months ago
- Scalable gVCF merging and joint variant calling for population sequencing projects☆174Updated last year
- Repository for the GA4GH Benchmarking Team work developing standardized benchmarking methods for germline small variant calls☆208Updated 4 years ago
- Bayesian genotyper for structural variants☆136Updated 4 years ago
- Detect germline or somatic variants from normal or tumour/normal whole-genome or targeted sequencing☆133Updated 5 years ago
- Workflows for processing high-throughput sequencing data for variant discovery with GATK4 and related tools☆160Updated 3 years ago