brentp / slivarLinks
genetic variant expressions, annotation, and filtering for great good.
☆263Updated 3 months ago
Alternatives and similar repositories for slivar
Users that are interested in slivar are comparing it to the libraries listed below
Sorting:
- fast sample-swap and relatedness checks on BAMs/CRAMs/VCFs/GVCFs... "like damn that is one smart wine guy"☆283Updated 3 weeks ago
- structural variant calling and genotyping with existing tools, but, smoothly.☆252Updated 11 months ago
- Annotation and Ranking of Structural Variation☆258Updated 2 months ago
- GRIDSS: the Genomic Rearrangement IDentification Software Suite☆268Updated 2 weeks ago
- annotate a VCF with other VCFs/BEDs/tabixed files☆377Updated last year
- classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF☆224Updated 3 weeks ago
- A tool for estimating repeat sizes☆193Updated last year
- Toolset for SV simulation, comparison and filtering☆379Updated last year
- Tools for processing and analyzing structural variants.☆151Updated 3 years ago
- A minimap2 frontend for PacBio native data formats☆197Updated 3 months ago
- Variant calling and somatic mutation/CNV detection for next-generation sequencing data☆159Updated 2 years ago
- A structural variation pipeline for short-read sequencing☆188Updated this week
- software tools for haplotype assembly from sequence data☆218Updated 3 months ago
- igv.js standalone page generator and automatic configuration to view bam/cram/vcf/bed. "working in under 1 minute"☆127Updated last year
- Structural variation and indel detection by local assembly☆246Updated last week
- Jasmine: SV Merging Across Samples☆215Updated 5 months ago
- goleft is a collection of bioinformatics tools distributed under MIT license in a single static binary☆220Updated 8 months ago
- Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data☆161Updated 9 months ago
- Bayesian genotyper for structural variants☆133Updated 4 years ago
- A tool set for short variant discovery in genetic sequence data.☆196Updated 4 years ago
- BEDOPS: high-performance genomic feature operations☆337Updated last month
- Workflows for germline short variant discovery with GATK4☆137Updated 4 years ago
- pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…☆278Updated 7 months ago
- a tool for CNV discovery and genotyping from depth-of-coverage by mapped reads☆222Updated 3 years ago
- Graph realignment tools for structural variants☆156Updated 2 years ago
- GATK RNA-Seq Variant Calling in Nextflow☆133Updated 2 years ago
- Genome browser and variant annotation☆304Updated this week
- Plot structural variant signals from many BAMs and CRAMs☆543Updated 10 months ago
- VarDict☆200Updated last year
- Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads☆214Updated last month