adamewing / bamsurgeonLinks
tools for adding mutations to existing .bam files, used for testing mutation callers
☆246Updated last year
Alternatives and similar repositories for bamsurgeon
Users that are interested in bamsurgeon are comparing it to the libraries listed below
Sorting:
- VarDict☆199Updated last year
- Structural variation and indel detection by local assembly☆248Updated last month
- Variant calling and somatic mutation/CNV detection for next-generation sequencing data☆163Updated 2 years ago
- The nimble & robust variant annotator☆185Updated last year
- Annotation and Ranking of Structural Variation☆263Updated 3 weeks ago
- Repository for the GA4GH Benchmarking Team work developing standardized benchmarking methods for germline small variant calls☆205Updated 4 years ago
- A structural variation pipeline for short-read sequencing☆194Updated this week
- An ensemble approach to accurately detect somatic mutations using SomaticSeq☆199Updated 2 months ago
- a tool for CNV discovery and genotyping from depth-of-coverage by mapped reads☆230Updated 3 years ago
- TransVar - multiway annotator for precision medicine☆126Updated 2 years ago
- Pindel can detect breakpoints of large deletions, medium sized insertions, inversions, tandem duplications and other structural variants …☆174Updated 5 years ago
- Precision HLA typing from next-generation sequencing data☆205Updated last year
- A tool for estimating repeat sizes☆198Updated last year
- Count bases in BAM/CRAM files☆319Updated 3 years ago
- GRIDSS: the Genomic Rearrangement IDentification Software Suite☆277Updated 5 months ago
- A tool set for short variant discovery in genetic sequence data.☆202Updated 4 years ago
- RTG Tools: Utilities for accurate VCF comparison and manipulation☆327Updated 5 months ago
- A fast Python and command-line utility for extracting simple statistics against genome positions based on sequence alignments from a SAM …☆194Updated 3 weeks ago
- Reads simulator☆282Updated 4 years ago
- A flexible framework for rapid genome analysis and interpretation☆317Updated 3 years ago
- Finder of Somatic Fusion Genes in RNA-seq data☆147Updated last month
- Microassembly based somatic variant caller for NGS data☆154Updated 3 years ago
- Workflows for germline short variant discovery with GATK4☆138Updated 4 years ago
- This Snakemake pipeline implements the GATK best-practices workflow☆260Updated 2 years ago
- BEDOPS: high-performance genomic feature operations☆352Updated 6 months ago
- Estimating tumor fraction in cell-free DNA from ultra-low-pass whole genome sequencing.☆190Updated last year
- Script to automatically create and run IGV snapshot batchscripts☆143Updated 2 years ago
- Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data☆172Updated last year
- a python extension of CNVnator -- a tool for CNV analysis from depth-of-coverage by mapped reads☆205Updated 3 weeks ago
- A bioinformatics software tool for clinical interpretation of genetic variants by the 2015 ACMG-AMP guideline☆197Updated 2 years ago