atks / vtLinks
A tool set for short variant discovery in genetic sequence data.
☆200Updated 4 years ago
Alternatives and similar repositories for vt
Users that are interested in vt are comparing it to the libraries listed below
Sorting:
- VarDict☆198Updated last year
- Variant calling and somatic mutation/CNV detection for next-generation sequencing data☆161Updated 2 years ago
- samblaster: a tool to mark duplicates and extract discordant and split reads from sam files.☆234Updated 4 years ago
- ABRA2☆92Updated 2 years ago
- Structural variation and indel detection by local assembly☆247Updated last month
- Tools for processing and analyzing structural variants.☆154Updated 3 years ago
- Repository for the GA4GH Benchmarking Team work developing standardized benchmarking methods for germline small variant calls☆203Updated 4 years ago
- Microassembly based somatic variant caller for NGS data☆155Updated 3 years ago
- Pindel can detect breakpoints of large deletions, medium sized insertions, inversions, tandem duplications and other structural variants …☆173Updated 5 years ago
- SV detection from paired end reads mapping☆117Updated 6 years ago
- tools for adding mutations to existing .bam files, used for testing mutation callers☆244Updated 9 months ago
- VarDict Java port☆134Updated last year
- This repository contains information about latest release from Genome in a Bottle project☆74Updated 5 years ago
- Workflows for germline short variant discovery with GATK4☆138Updated 4 years ago
- Bayesian genotyper for structural variants☆134Updated 4 years ago
- The nimble & robust variant annotator☆183Updated last year
- Scalable gVCF merging and joint variant calling for population sequencing projects☆164Updated last year
- GRIDSS: the Genomic Rearrangement IDentification Software Suite☆270Updated 2 months ago
- C++ htslib/bwa-mem/fermi interface for interrogating sequence data☆137Updated last month
- A powerful toolset for genome arithmetic.☆142Updated 4 years ago
- a tool for CNV discovery and genotyping from depth-of-coverage by mapped reads☆225Updated 3 years ago
- The DevNet project on github stores the PacBio DevNet website.☆116Updated 7 years ago
- A tool for estimating repeat sizes☆195Updated last year
- Short-read and long-read sequencing tools for diagnostics☆164Updated this week
- Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data☆164Updated 11 months ago
- Annotation and Ranking of Structural Variation☆262Updated 3 weeks ago
- GATK RNA-Seq Variant Calling in Nextflow☆134Updated 2 years ago
- Bayesian haplotype-based mutation calling☆314Updated last week
- Finder of Somatic Fusion Genes in RNA-seq data☆146Updated 2 years ago
- Whole Genome Simulator for Next-Generation Sequencing☆99Updated 8 months ago