Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.
☆98Apr 20, 2026Updated 5 months ago
Alternatives and similar repositories for Pisces
Users that are interested in Pisces are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Strelka2 germline and somatic small variant caller☆393Apr 20, 2026Updated 5 months ago
- ☆45Nov 18, 2019Updated 6 years ago
- The nimble & robust variant annotator☆196Apr 20, 2026Updated 5 months ago
- VarDict☆204Jan 5, 2024Updated 2 years ago
- Concordance and contamination estimator for tumor–normal pairs☆59Oct 22, 2024Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Microassembly based somatic variant caller for NGS data☆153Jun 23, 2022Updated 4 years ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Jun 13, 2026Updated 3 months ago
- fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing☆877May 2, 2026Updated 4 months ago
- SiNVICT: Ultra-Sensitive Detection of Single Nucleotide Variants and Indels in Circulating Tumour DNA☆25Oct 6, 2020Updated 5 years ago
- Structural variant and indel caller for mapped sequencing data☆467Oct 11, 2025Updated 11 months ago
- ☆23Sep 4, 2018Updated 8 years ago
- genotype :: ped correspondence check, ancestry check, sex check. directly, quickly on VCF☆152Feb 17, 2026Updated 7 months ago
- ☆69Jun 21, 2022Updated 4 years ago
- fast sample-swap and relatedness checks on BAMs/CRAMs/VCFs/GVCFs... "like damn that is one smart wine guy"☆336Updated this week
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Canvas - Copy number variant (CNV) calling from DNA sequencing data☆129Apr 20, 2026Updated 5 months ago
- Somatic variant identification from unpaired samples☆16Jan 31, 2017Updated 9 years ago
- Towards fast and accurate SNP genotyping from whole genome sequencing data for bedside diagnostics.☆22Feb 10, 2019Updated 7 years ago
- Generate an enhanced VCF files from ClinVar XML Full releases☆17Jul 21, 2026Updated 2 months ago
- microsatellite instability detection using tumor only or paired tumor-normal data☆134Jan 6, 2021Updated 5 years ago
- GRIDSS: the Genomic Rearrangement IDentification Software Suite☆285May 21, 2025Updated last year
- Tools for working with genomic and high throughput sequencing data.☆372Aug 20, 2026Updated last month
- Remove primer sequence from BAM alignments by soft-clipping☆29Dec 5, 2019Updated 6 years ago
- Haplotype VCF comparison tools☆473Dec 7, 2023Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Bayesian mixture models for estimating and clustering cancer cell fractions☆26Dec 20, 2022Updated 3 years ago
- An ensemble approach to accurately detect somatic mutations using SomaticSeq☆207Aug 23, 2026Updated last month
- A curated list of awesome clonality and tumor heterogeneity resources☆16Jun 25, 2019Updated 7 years ago
- Genomic VCF to tab-separated values☆49May 23, 2026Updated 4 months ago
- NeuSomatic: Deep convolutional neural networks for accurate somatic mutation detection☆175Dec 23, 2021Updated 4 years ago
- Personal Cancer Genome Reporter (PCGR)☆284Sep 20, 2026Updated last week
- A wrapper for calling small variants from human germline high-coverage single-sample Illumina data☆14Jul 21, 2019Updated 7 years ago
- ABRA2☆96Dec 2, 2022Updated 3 years ago
- A tool set for short variant discovery in genetic sequence data.☆207May 4, 2021Updated 5 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- picking up low allelic-fraction, somatic variants from tumor samples☆14Jan 4, 2018Updated 8 years ago
- Characterization of Germline variants☆102Mar 15, 2022Updated 4 years ago
- ☆43Feb 9, 2024Updated 2 years ago
- ☆57Mar 31, 2020Updated 6 years ago
- Variant calling and somatic mutation/CNV detection for next-generation sequencing data☆166Mar 28, 2023Updated 3 years ago
- Software program for checking sample matching for NGS data☆143Jun 20, 2024Updated 2 years ago
- Simplify snpEff annotations for interesting cases☆22Feb 18, 2019Updated 7 years ago