Illumina / Pisces

Related projects ⓘ

Alternatives and complementary repositories for Pisces

• gatk-workflows / gatk4-exome-analysis-pipeline
  This WDL pipeline implements data pre-processing and initial variant calling according to the GATK Best Practices for germline SNP and In…
  ☆50Updated 4 years ago
• bahlolab / bioinfotools
  Documenting usage and experience with bioinformatic tools
  ☆40Updated 9 years ago
• GooglingTheCancerGenome / sv-callers
  Snakemake-based workflow for detecting structural variants in genomic data
  ☆77Updated 9 months ago
• mozack / abra2
  ABRA2
  ☆91Updated last year
• FoundationMedicineInc / SGZ
  ☆38Updated 9 months ago
• GeneDx / scramble
  ☆36Updated 6 months ago
• walaj / VariantBam
  Filtering and profiling of next-generational sequencing data using region-specific rules
  ☆74Updated last year
• KCCG / ClinSV
  Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data
  ☆66Updated 2 months ago
• svviz / svviz
  Read visualizer for structural variants
  ☆81Updated 6 years ago
• PubuduSaneth / cnvScan
  CNV screening and annotation tool
  ☆24Updated 8 years ago
• gatk-workflows / gatk4-somatic-snvs-indels
  This repo has been archived, these workflows are still available in the GATK repository under the scripts directory. The workflows are al…
  ☆76Updated 4 years ago
• cancerit / ascatNgs
  Somatic copy number analysis using WGS paired end wholegenome sequencing
  ☆69Updated 4 years ago
• AstraZeneca-NGS / reference_data
  Reference data: BED files, genes, transcripts, variations.
  ☆82Updated 6 years ago
• gavinha / TitanCNA
  Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer
  ☆94Updated 3 years ago
• arq5x / bedtools-protocols
  ☆78Updated 10 years ago
• broadinstitute / oncotator
  ☆67Updated 2 years ago
• rhshah / IMPACT-Pipeline
  Framework to process and call somatic variation from NGS dataset generated using MSK-IMPACT assay
  ☆55Updated 3 years ago
• nygenome / Conpair
  Concordance and contamination estimator for tumor–normal pairs
  ☆56Updated 3 weeks ago
• niu-lab / msisensor2
  Microsatellite instability (MSI) detection for tumor only data.
  ☆94Updated 6 months ago
• RahmanTeam / DECoN
  ☆50Updated last year
• geocarvalho / sv-cnv-studies
  Relevant papers for CNV and SV approaches
  ☆94Updated 2 weeks ago
• genome-in-a-bottle / giab_latest_release
  This repository contains information about latest release from Genome in a Bottle project
  ☆73Updated 5 years ago
• sztup / scarHRD
  ☆103Updated last year
• brentp / duphold
  don't get DUP'ed or DEL'ed by your putative SVs.
  ☆101Updated 3 years ago
• gatk-workflows / seq-format-conversion
  Workflows for converting between sequence data formats
  ☆37Updated 3 years ago
• Illumina / ExpansionHunterDenovo
  A suite of tools for detecting expansions of short tandem repeats
  ☆80Updated last year
• ccagc / QDNAseq
  QDNAseq package for Bioconductor
  ☆48Updated 3 months ago
• vplagnol / ExomeDepth
  ExomeDepth R package for the detection of copy number variants in exomes and gene panels using high throughput DNA sequencing data.
  ☆66Updated last year
• secastel / phaser
  phasing and Allele Specific Expression from RNA-seq
  ☆111Updated 4 months ago