Canvas - Copy number variant (CNV) calling from DNA sequencing data
☆128Sep 3, 2019Updated 6 years ago
Alternatives and similar repositories for canvas
Users that are interested in canvas are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Structural variant and indel caller for mapped sequencing data☆460Oct 11, 2025Updated 5 months ago
- Strelka2 germline and somatic small variant caller☆390Dec 29, 2021Updated 4 years ago
- a tool for CNV discovery and genotyping from depth-of-coverage by mapped reads☆234Feb 17, 2022Updated 4 years ago
- Microassembly based somatic variant caller for NGS data☆154Jun 23, 2022Updated 3 years ago
- Haplotype VCF comparison tools☆460Dec 7, 2023Updated 2 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Read visualizer for structural variants☆84Aug 18, 2018Updated 7 years ago
- VarDict☆203Jan 5, 2024Updated 2 years ago
- A flexible framework for rapid genome analysis and interpretation☆319Oct 18, 2022Updated 3 years ago
- don't get DUP'ed or DEL'ed by your putative SVs.☆107Dec 14, 2020Updated 5 years ago
- Haplotype-based somatic genome simulator☆10May 19, 2017Updated 8 years ago
- microsatellite instability detection using tumor only or paired tumor-normal data☆132Jan 6, 2021Updated 5 years ago
- Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.☆99Jun 22, 2022Updated 3 years ago
- lumpy: a general probabilistic framework for structural variant discovery☆342Feb 22, 2026Updated last month
- Structural variation and indel detection by local assembly☆254Mar 17, 2026Updated last week
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- annotate a VCF with other VCFs/BEDs/tabixed files☆399Aug 30, 2025Updated 6 months ago
- RTG Tools: Utilities for accurate VCF comparison and manipulation☆334May 27, 2025Updated 10 months ago
- A program to detect denovo-variants using next-generation sequencing data.☆55Mar 30, 2020Updated 5 years ago
- DELLY2: Structural variant discovery by integrated paired-end and split-read analysis☆508Feb 26, 2026Updated last month
- Copy number variant detection from targeted DNA sequencing☆606Mar 11, 2026Updated 2 weeks ago
- Pipeline for structural variant image curation and analysis.☆49Dec 5, 2021Updated 4 years ago
- A tool set for short variant discovery in genetic sequence data.☆204May 4, 2021Updated 4 years ago
- A tool for estimating repeat sizes☆207Jan 30, 2024Updated 2 years ago
- VisCap is an open flexible, software program targeted to clinical laboratories for inference and visualization of germline copy number va…☆22Dec 13, 2019Updated 6 years ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- find large indels (in the blind spot between GATK/freebayes and SV callers)☆39Dec 3, 2017Updated 8 years ago
- Plot structural variant signals from many BAMs and CRAMs☆562Jul 13, 2024Updated last year
- ☆13Jun 21, 2017Updated 8 years ago
- SNV expectation maximisation based mutation calling algorithm aimed at detecting somatic mutations in paired (tumour/normal) cancer sampl…☆64Apr 24, 2025Updated 11 months ago
- De novo assembly based variant calling pipeline for Illumina short reads☆110Nov 30, 2020Updated 5 years ago
- Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data☆175Aug 22, 2024Updated last year
- DeTiN is designed to measure tumor-in-normal contamination and improve somatic variant detection sensitivity when using a contaminated ma…☆53May 20, 2022Updated 3 years ago
- The Platinum Genomes Truthset☆90Nov 8, 2017Updated 8 years ago
- SiNVICT: Ultra-Sensitive Detection of Single Nucleotide Variants and Indels in Circulating Tumour DNA☆27Oct 6, 2020Updated 5 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- The nimble & robust variant annotator☆192Apr 25, 2024Updated last year
- A method to identify structural variation from sequencing data in target regions☆32Sep 23, 2020Updated 5 years ago
- genotype :: ped correspondence check, ancestry check, sex check. directly, quickly on VCF☆148Feb 17, 2026Updated last month
- fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing☆833Feb 10, 2026Updated last month
- tools for adding mutations to existing .bam files, used for testing mutation callers☆247Oct 18, 2024Updated last year
- 肿瘤突变负荷学习笔记（tumor mutation burden）☆16Dec 10, 2019Updated 6 years ago
- structural variant calling and genotyping with existing tools, but, smoothly.☆264Jun 17, 2024Updated last year