Canvas - Copy number variant (CNV) calling from DNA sequencing data
☆129Apr 20, 2026Updated 6 months ago
Alternatives and similar repositories for canvas
Users that are interested in canvas are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Structural variant and indel caller for mapped sequencing data☆467Oct 11, 2025Updated last year
- Allele-specific copy number estimation with whole genome sequencing☆23Nov 10, 2023Updated 2 years ago
- A flexible framework for rapid genome analysis and interpretation☆319Oct 18, 2022Updated 4 years ago
- Strelka2 germline and somatic small variant caller☆393Apr 20, 2026Updated 6 months ago
- Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.☆98Apr 20, 2026Updated 6 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- VarDict☆204Jan 5, 2024Updated 2 years ago
- a tool for CNV discovery and genotyping from depth-of-coverage by mapped reads☆236Feb 17, 2022Updated 4 years ago
- Microassembly based somatic variant caller for NGS data☆153Jun 23, 2022Updated 4 years ago
- Haplotype VCF comparison tools☆474Dec 7, 2023Updated 2 years ago
- DeTiN is designed to measure tumor-in-normal contamination and improve somatic variant detection sensitivity when using a contaminated ma…☆53May 20, 2022Updated 4 years ago
- A tool set for short variant discovery in genetic sequence data.☆207May 4, 2021Updated 5 years ago
- The nimble & robust variant annotator☆194Apr 20, 2026Updated 6 months ago
- Copy number variant detection from targeted DNA sequencing☆617Oct 15, 2026Updated 3 weeks ago
- tools for adding mutations to existing .bam files, used for testing mutation callers☆254Aug 5, 2026Updated 3 months ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- lumpy: a general probabilistic framework for structural variant discovery☆345Feb 22, 2026Updated 8 months ago
- Haplotype-based somatic genome simulator☆10Apr 20, 2026Updated 6 months ago
- Structural variation and indel detection by local assembly☆258Aug 19, 2026Updated 2 months ago
- Report generator for Chanjo output☆10Jun 5, 2024Updated 2 years ago
- Pipeline for structural variant image curation and analysis.☆49Dec 5, 2021Updated 4 years ago
- DELLY2: Structural variant discovery by integrated paired-end and split-read analysis☆541Updated this week
- Read visualizer for structural variants☆85Aug 18, 2018Updated 8 years ago
- VisCap is an open flexible, software program targeted to clinical laboratories for inference and visualization of germline copy number va…☆22Dec 13, 2019Updated 6 years ago
- find large indels (in the blind spot between GATK/freebayes and SV callers)☆39Dec 3, 2017Updated 8 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- A small repo for storing the code for making the files and html for CCRs.☆22Oct 22, 2019Updated 7 years ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Oct 23, 2026Updated 2 weeks ago
- Plot structural variant signals from many BAMs and CRAMs☆574Jul 13, 2024Updated 2 years ago
- Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis☆1,030Aug 24, 2024Updated 2 years ago
- don't get DUP'ed or DEL'ed by your putative SVs.☆109Dec 14, 2020Updated 5 years ago
- microsatellite instability detection using tumor only or paired tumor-normal data☆133Jan 6, 2021Updated 5 years ago
- annotate a VCF with other VCFs/BEDs/tabixed files☆404Jun 16, 2026Updated 4 months ago
- Pindel can detect breakpoints of large deletions, medium sized insertions, inversions, tandem duplications and other structural variants …☆180Jan 7, 2020Updated 6 years ago
- RTG Tools: Utilities for accurate VCF comparison and manipulation☆339May 27, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A program to detect denovo-variants using next-generation sequencing data.☆55Mar 30, 2020Updated 6 years ago
- Bamgineer: Introduction of simulated allele-specific copy number variants into exome and targeted sequence data sets☆37Jul 30, 2020Updated 6 years ago
- A method to identify structural variation from sequencing data in target regions☆32Sep 23, 2020Updated 6 years ago
- samblaster: a tool to mark duplicates and extract discordant and split reads from sam files.☆243Aug 11, 2021Updated 5 years ago
- ☆13Jun 21, 2017Updated 9 years ago
- A tool for estimating repeat sizes☆220Jan 30, 2024Updated 2 years ago
- Flexible genotype query among 30,000+ samples whole-genome☆95Sep 4, 2019Updated 7 years ago