Canvas - Copy number variant (CNV) calling from DNA sequencing data
☆129Apr 20, 2026Updated 2 months ago
Alternatives and similar repositories for canvas
Users that are interested in canvas are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Structural variant and indel caller for mapped sequencing data☆468Oct 11, 2025Updated 8 months ago
- Strelka2 germline and somatic small variant caller☆393Apr 20, 2026Updated 2 months ago
- a tool for CNV discovery and genotyping from depth-of-coverage by mapped reads☆235Feb 17, 2022Updated 4 years ago
- Microassembly based somatic variant caller for NGS data☆154Jun 23, 2022Updated 4 years ago
- Haplotype VCF comparison tools☆470Dec 7, 2023Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Read visualizer for structural variants☆84Aug 18, 2018Updated 7 years ago
- VarDict☆204Jan 5, 2024Updated 2 years ago
- A flexible framework for rapid genome analysis and interpretation☆320Oct 18, 2022Updated 3 years ago
- don't get DUP'ed or DEL'ed by your putative SVs.☆108Dec 14, 2020Updated 5 years ago
- Haplotype-based somatic genome simulator☆10Apr 20, 2026Updated 2 months ago
- microsatellite instability detection using tumor only or paired tumor-normal data☆133Jan 6, 2021Updated 5 years ago
- Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.☆99Apr 20, 2026Updated 2 months ago
- lumpy: a general probabilistic framework for structural variant discovery☆343Feb 22, 2026Updated 4 months ago
- Structural variation and indel detection by local assembly☆256Jun 23, 2026Updated 2 weeks ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- annotate a VCF with other VCFs/BEDs/tabixed files☆407Jun 16, 2026Updated 3 weeks ago
- RTG Tools: Utilities for accurate VCF comparison and manipulation☆337May 27, 2025Updated last year
- A program to detect denovo-variants using next-generation sequencing data.☆55Mar 30, 2020Updated 6 years ago
- DELLY2: Structural variant discovery by integrated paired-end and split-read analysis☆527Updated this week
- Copy number variant detection from targeted DNA sequencing☆612Jul 1, 2026Updated last week
- Pipeline for structural variant image curation and analysis.☆49Dec 5, 2021Updated 4 years ago
- A tool set for short variant discovery in genetic sequence data.☆206May 4, 2021Updated 5 years ago
- A tool for estimating repeat sizes☆215Jan 30, 2024Updated 2 years ago
- VisCap is an open flexible, software program targeted to clinical laboratories for inference and visualization of germline copy number va…☆22Dec 13, 2019Updated 6 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- find large indels (in the blind spot between GATK/freebayes and SV callers)☆39Dec 3, 2017Updated 8 years ago
- Plot structural variant signals from many BAMs and CRAMs☆567Jul 13, 2024Updated last year
- ☆13Jun 21, 2017Updated 9 years ago
- De novo assembly based variant calling pipeline for Illumina short reads☆110Nov 30, 2020Updated 5 years ago
- Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data☆177Aug 22, 2024Updated last year
- tools for adding mutations to existing .bam files, used for testing mutation callers☆251Oct 18, 2024Updated last year
- DeTiN is designed to measure tumor-in-normal contamination and improve somatic variant detection sensitivity when using a contaminated ma…☆53May 20, 2022Updated 4 years ago
- The Platinum Genomes Truthset☆90Nov 8, 2017Updated 8 years ago
- The nimble & robust variant annotator☆196Apr 20, 2026Updated 2 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A method to identify structural variation from sequencing data in target regions☆32Sep 23, 2020Updated 5 years ago
- genotype :: ped correspondence check, ancestry check, sex check. directly, quickly on VCF☆150Feb 17, 2026Updated 4 months ago
- fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing☆861May 2, 2026Updated 2 months ago
- 肿瘤突变负荷学习笔记（tumor mutation burden）☆16Dec 10, 2019Updated 6 years ago
- Pindel can detect breakpoints of large deletions, medium sized insertions, inversions, tandem duplications and other structural variants …☆178Jan 7, 2020Updated 6 years ago
- structural variant calling and genotyping with existing tools, but, smoothly.☆266Jun 17, 2024Updated 2 years ago
- fast sample-swap and relatedness checks on BAMs/CRAMs/VCFs/GVCFs... "like damn that is one smart wine guy"☆326Apr 24, 2026Updated 2 months ago