Estimate damage in standard NGS library preparation. Incompatible with library preparation methods from which the imbalance is lost (such as transposon based methods and Ultra II FS library preparation from NEB).
☆54Jun 5, 2017Updated 9 years ago
Alternatives and similar repositories for Damage-estimator
Users that are interested in Damage-estimator are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Concordance and contamination estimator for tumor–normal pairs☆60Oct 22, 2024Updated 2 years ago
- Microassembly based somatic variant caller for NGS data☆153Jun 23, 2022Updated 4 years ago
- Opossum is a tool to pre-process RNA-seq reads prior to variant calling.☆28Jul 7, 2018Updated 8 years ago
- Simulate next-generation sequencing reads for tumor samples☆11Apr 25, 2021Updated 5 years ago
- Algorithm to implement Fraction and Copy number Estimate from Tumor/normal Sequencing.☆166Feb 12, 2026Updated 8 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Create "haplotype maps" of variants in order to use with Picardtools Crosscheck_Files utility, which allows for robust genotyping of func…☆29Jun 12, 2026Updated 4 months ago
- tools for adding mutations to existing .bam files, used for testing mutation callers☆254Aug 5, 2026Updated 3 months ago
- seqcover allows users to view coverage for hundreds of genes and dozens of samples☆51Apr 9, 2021Updated 5 years ago
- Utility functions for FACETS☆40Oct 24, 2025Updated last year
- Calculates the Variant Allele Fraction of variants in VCF files☆19Nov 28, 2024Updated last year
- Qtip: a tandem simulation approach for accurately predicting read alignment mapping qualities☆25Oct 31, 2019Updated 7 years ago
- 📊Evaluating, filtering, comparing, and visualising VCF☆29Mar 9, 2023Updated 3 years ago
- Filtering and profiling of next-generational sequencing data using region-specific rules☆79Oct 30, 2023Updated 3 years ago
- A Framework to call Structural Variants from NGS based datasets☆22Jan 22, 2018Updated 8 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- A comprehensive pipeline to analyze and visualize structural variants☆20Jan 28, 2020Updated 6 years ago
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer☆20Dec 8, 2020Updated 5 years ago
- DeTiN is designed to measure tumor-in-normal contamination and improve somatic variant detection sensitivity when using a contaminated ma…☆53May 20, 2022Updated 4 years ago
- cDriver R package for finding candidate driver genes in cancers☆18Jan 18, 2018Updated 8 years ago
- Create mutation signatures from MAF's, and decompose them into Stratton signatures☆62Jun 7, 2019Updated 7 years ago
- A read extraction and realignment tool for next generation sequencing data☆107Oct 29, 2022Updated 4 years ago
- C++ htslib/bwa-mem/fermi interface for interrogating sequence data☆139Apr 27, 2026Updated 6 months ago
- A curated list of awesome clonality and tumor heterogeneity resources☆16Jun 25, 2019Updated 7 years ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆25May 2, 2018Updated 8 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Structural variation and indel detection by local assembly☆258Aug 19, 2026Updated 2 months ago
- Relevant papers for CNV and SV approaches☆95Nov 5, 2024Updated 2 years ago
- Query Mutated Reads from a Bam☆26Nov 26, 2018Updated 7 years ago
- R package to organise and standardise your genomic variant calls obtained with different callers.☆11Jul 15, 2019Updated 7 years ago
- igv.js standalone page generator and automatic configuration to view bam/cram/vcf/bed. "working in under 1 minute"☆132Oct 14, 2025Updated last year
- Haplotype-based somatic genome simulator☆10Apr 20, 2026Updated 6 months ago
- Training and using TFFM/PSSM/4-bits + DNA shape classifiers☆13Jun 11, 2018Updated 8 years ago
- conda recipes for genomic data☆84Jul 31, 2021Updated 5 years ago
- DRAGEN Tumor/Normal workflow post-processing☆24Sep 18, 2023Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Smart VCF parser DSL☆84May 24, 2022Updated 4 years ago
- VCF parser using the Python pandas library☆28Feb 6, 2022Updated 4 years ago
- Tools for working with SAM/BAM data☆613Dec 22, 2024Updated last year
- Allele frequency filter app☆15May 4, 2022Updated 4 years ago
- Detect and visualize microsatellite instability(MSI) from NGS data☆33Jun 4, 2019Updated 7 years ago
- Mutational signature analysis for low statistics SNV data☆67Aug 7, 2024Updated 2 years ago
- Bayesian haplotype-based mutation calling☆327Feb 13, 2026Updated 8 months ago