Ettwiller / Damage-estimatorLinks
Estimate damage in standard NGS library preparation. Incompatible with library preparation methods from which the imbalance is lost (such as transposon based methods and Ultra II FS library preparation from NEB).
☆54Updated 8 years ago
Alternatives and similar repositories for Damage-estimator
Users that are interested in Damage-estimator are comparing it to the libraries listed below
Sorting:
- DeTiN is designed to measure tumor-in-normal contamination and improve somatic variant detection sensitivity when using a contaminated ma…☆53Updated 3 years ago
- ☆78Updated 11 years ago
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆49Updated 6 years ago
- QC3, a quality control tool designed for DNA sequencing data for raw data, alignment, and variant calling.☆32Updated 9 years ago
- Deconvolving tumor purity and ploidy by integrating copy number alterations and loss of heterozygosity☆40Updated 8 years ago
- Concordance and contamination estimator for tumor–normal pairs☆59Updated last year
- An awk-like VCF parser☆56Updated 2 years ago
- ☆46Updated 6 years ago
- Filtering and profiling of next-generational sequencing data using region-specific rules☆79Updated 2 years ago
- Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses☆31Updated 3 years ago
- Thousand Variant Callers Project Repository☆74Updated 6 years ago
- A tool to benchmark mappers and different parameters within minutes☆44Updated 6 years ago
- R package for inferring copy number from read depth☆32Updated 3 years ago
- ☆55Updated 5 years ago
- Mapped QC analysis program☆44Updated 7 years ago
- Tools for analyzing 10X Genomics data☆42Updated 6 years ago
- ☆69Updated 3 years ago
- A read extraction and realignment tool for next generation sequencing data☆103Updated 3 years ago
- Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.☆99Updated 3 years ago
- Read visualizer for structural variants☆84Updated 7 years ago
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated 2 years ago
- Create mutation signatures from MAF's, and decompose them into Stratton signatures☆60Updated 6 years ago
- (DEPRECATED) epic: diffuse domain ChIP-Seq caller based on SICER☆31Updated 7 years ago
- BigWig and BAM utilities☆100Updated last year
- Multi-sample somatic variant caller☆52Updated 3 years ago
- Documenting usage and experience with bioinformatic tools☆40Updated 10 years ago
- identifying mutational significance in cancer genomes☆62Updated 3 years ago
- Full-spectrum copy number variation detection by high-throughput DNA sequencing☆40Updated 4 years ago
- ConsensusCruncher is a tool that suppresses errors in next-generation sequencing data by using unique molecular identifiers (UMIs) to ama…☆21Updated 3 years ago
- Fast fusion detection using kallisto☆79Updated 7 months ago