Ettwiller / Damage-estimatorLinks
Estimate damage in standard NGS library preparation. Incompatible with library preparation methods from which the imbalance is lost (such as transposon based methods and Ultra II FS library preparation from NEB).
☆54Updated 8 years ago
Alternatives and similar repositories for Damage-estimator
Users that are interested in Damage-estimator are comparing it to the libraries listed below
Sorting:
- ☆78Updated 11 years ago
- DeTiN is designed to measure tumor-in-normal contamination and improve somatic variant detection sensitivity when using a contaminated ma…☆53Updated 3 years ago
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆49Updated 6 years ago
- QC3, a quality control tool designed for DNA sequencing data for raw data, alignment, and variant calling.☆32Updated 9 years ago
- Concordance and contamination estimator for tumor–normal pairs☆58Updated last year
- Filtering and profiling of next-generational sequencing data using region-specific rules☆79Updated 2 years ago
- Deconvolving tumor purity and ploidy by integrating copy number alterations and loss of heterozygosity☆40Updated 8 years ago
- An awk-like VCF parser☆56Updated last year
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated 2 years ago
- A tool to benchmark mappers and different parameters within minutes☆44Updated 6 years ago
- SiNVICT: Ultra-Sensitive Detection of Single Nucleotide Variants and Indels in Circulating Tumour DNA☆27Updated 5 years ago
- Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.☆98Updated 3 years ago
- Mapped QC analysis program☆44Updated 7 years ago
- Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses☆31Updated 3 years ago
- ☆46Updated 6 years ago
- Support Vector Structural Variation Genotyper☆58Updated 5 years ago
- A read extraction and realignment tool for next generation sequencing data☆103Updated 3 years ago
- (DEPRECATED) epic: diffuse domain ChIP-Seq caller based on SICER☆31Updated 6 years ago
- Multi-sample somatic variant caller☆52Updated 3 years ago
- Fast fusion detection using kallisto☆79Updated 5 months ago
- Read visualizer for structural variants☆84Updated 7 years ago
- Exome/Capture/RNASeq Pipeline Implementation using snakemake☆47Updated 7 years ago
- BigWig and BAM utilities☆98Updated last year
- Very simple, pure python, BAM file reader☆79Updated 6 years ago
- ☆55Updated 5 years ago
- R package for inferring copy number from read depth☆32Updated 3 years ago
- create a gemini-compatible database from a VCF☆56Updated 4 years ago
- ☆69Updated 3 years ago
- Thousand Variant Callers Project Repository☆74Updated 6 years ago
- Full-spectrum copy number variation detection by high-throughput DNA sequencing☆40Updated 4 years ago