Ettwiller / Damage-estimatorLinks
Estimate damage in standard NGS library preparation. Incompatible with library preparation methods from which the imbalance is lost (such as transposon based methods and Ultra II FS library preparation from NEB).
☆53Updated 8 years ago
Alternatives and similar repositories for Damage-estimator
Users that are interested in Damage-estimator are comparing it to the libraries listed below
Sorting:
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆49Updated 6 years ago
- DeTiN is designed to measure tumor-in-normal contamination and improve somatic variant detection sensitivity when using a contaminated ma…☆51Updated 3 years ago
- An awk-like VCF parser☆56Updated last year
- ☆78Updated 11 years ago
- Deconvolving tumor purity and ploidy by integrating copy number alterations and loss of heterozygosity☆40Updated 8 years ago
- QC3, a quality control tool designed for DNA sequencing data for raw data, alignment, and variant calling.☆32Updated 9 years ago
- Mapped QC analysis program☆44Updated 7 years ago
- Concordance and contamination estimator for tumor–normal pairs☆58Updated 10 months ago
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated 2 years ago
- Multi-sample somatic variant caller☆52Updated 3 years ago
- Filtering and profiling of next-generational sequencing data using region-specific rules☆79Updated last year
- SiNVICT: Ultra-Sensitive Detection of Single Nucleotide Variants and Indels in Circulating Tumour DNA☆27Updated 4 years ago
- Support Vector Structural Variation Genotyper☆58Updated 5 years ago
- Thousand Variant Callers Project Repository☆73Updated 5 years ago
- (DEPRECATED) epic: diffuse domain ChIP-Seq caller based on SICER☆31Updated 6 years ago
- ☆46Updated 5 years ago
- Tools for analyzing 10X Genomics data☆42Updated 6 years ago
- Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.☆98Updated 3 years ago
- BigWig and BAM utilities☆97Updated last year
- A method to identify structural variation from sequencing data in target regions☆32Updated 4 years ago
- ☆54Updated 5 years ago
- A read extraction and realignment tool for next generation sequencing data☆103Updated 2 years ago
- Create mutation signatures from MAF's, and decompose them into Stratton signatures☆60Updated 6 years ago
- Assembly Based ReAligner☆74Updated 7 years ago
- identifying mutational significance in cancer genomes☆61Updated 2 years ago
- Toolkit for processing TAB-delimited format☆62Updated 10 months ago
- ☆26Updated 2 months ago
- Visualization and annotation of CNVs from population-scale whole-genome sequencing data☆72Updated 7 years ago
- Documenting usage and experience with bioinformatic tools☆40Updated 9 years ago
- Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses☆31Updated 3 years ago