gedoardo83 / GARFIELD-NGSLinks
GARFIELD-NGS: Genomic vARiants FIltering by dEep Learning moDels in NGS
☆17Updated 6 years ago
Alternatives and similar repositories for GARFIELD-NGS
Users that are interested in GARFIELD-NGS are comparing it to the libraries listed below
Sorting:
- VVP (VAAST Variant Prioritizer) rapidly prioritizes genetic variants☆19Updated 7 years ago
- Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses☆31Updated 3 years ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆26Updated 7 years ago
- A Framework to call Structural Variants from NGS based datasets☆22Updated 7 years ago
- a Shiny/R application to view and annotate copy number variations☆28Updated 2 years ago
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated 2 years ago
- CLAMMS is a scalable tool for detecting common and rare copy number variants from whole-exome sequencing data.☆29Updated 4 years ago
- VisCap is an open flexible, software program targeted to clinical laboratories for inference and visualization of germline copy number va…☆22Updated 5 years ago
- Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA☆29Updated last year
- filtering trio-based genetic variants in VCFs for clinical review☆21Updated 4 years ago
- Bamgineer: Introduction of simulated allele-specific copy number variants into exome and targeted sequence data sets☆37Updated 4 years ago
- Simplify snpEff annotations for interesting cases☆22Updated 6 years ago
- CAVA (Clinical Annotation of VAriants)☆14Updated 6 years ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated 5 months ago
- Genomic VCF to tab-separated values☆47Updated 2 years ago
- SiNVICT: Ultra-Sensitive Detection of Single Nucleotide Variants and Indels in Circulating Tumour DNA☆27Updated 4 years ago
- A set of tools to annotate VCF files with expression and readcount data☆29Updated 4 months ago
- A method to identify structural variation from sequencing data in target regions☆32Updated 4 years ago
- A webtool for the clinical interpretation of CNVs in rare disease patients☆12Updated 3 years ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year
- Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes☆29Updated last year
- Remove primer sequence from BAM alignments by soft-clipping☆31Updated 5 years ago
- 📊Evaluating, filtering, comparing, and visualising VCF☆28Updated 2 years ago
- CNV detection tool for targeted NGS panel data☆16Updated 3 years ago
- This repository contains information about ongoing analysis performed by GIAB☆14Updated 5 years ago
- Call regions of homozygosity and make tentative UPD calls☆11Updated 2 weeks ago
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer☆21Updated 4 years ago
- Structural Variation breakpoint discovery via adaptive learning☆15Updated 2 years ago
- Variant caller GUI + genetic disease analysis☆22Updated 5 years ago
- Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.☆39Updated 2 years ago