gedoardo83 / GARFIELD-NGSLinks
GARFIELD-NGS: Genomic vARiants FIltering by dEep Learning moDels in NGS
☆17Updated 6 years ago
Alternatives and similar repositories for GARFIELD-NGS
Users that are interested in GARFIELD-NGS are comparing it to the libraries listed below
Sorting:
- VVP (VAAST Variant Prioritizer) rapidly prioritizes genetic variants☆19Updated 7 years ago
- VisCap is an open flexible, software program targeted to clinical laboratories for inference and visualization of germline copy number va…☆22Updated 5 years ago
- a Shiny/R application to view and annotate copy number variations☆28Updated 2 years ago
- Bamgineer: Introduction of simulated allele-specific copy number variants into exome and targeted sequence data sets☆37Updated 5 years ago
- CAVA (Clinical Annotation of VAriants)☆14Updated 7 years ago
- ☆11Updated 7 years ago
- Structural Variation breakpoint discovery via adaptive learning☆16Updated 2 years ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆25Updated 7 years ago
- SiNVICT: Ultra-Sensitive Detection of Single Nucleotide Variants and Indels in Circulating Tumour DNA☆27Updated 5 years ago
- Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses☆31Updated 3 years ago
- A Framework to call Structural Variants from NGS based datasets☆22Updated 7 years ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated last week
- Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes☆31Updated 3 months ago
- ☆29Updated 4 years ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year
- filtering trio-based genetic variants in VCFs for clinical review☆21Updated 5 years ago
- ☆35Updated 4 years ago
- A method to identify structural variation from sequencing data in target regions☆32Updated 5 years ago
- Automated human exome/genome variants detection from FASTQ files☆23Updated 4 years ago
- CLAMMS is a scalable tool for detecting common and rare copy number variants from whole-exome sequencing data.☆30Updated 4 years ago
- A set of tools to annotate VCF files with expression and readcount data☆29Updated 8 months ago
- Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA☆29Updated last year
- create a gemini-compatible database from a VCF☆56Updated 4 years ago
- myVCF: a web-based platform for target and exome mutations data management☆20Updated 4 years ago
- Simplify snpEff annotations for interesting cases☆22Updated 6 years ago
- PopSTR - A Population based microsatellite genotyper☆33Updated 2 years ago
- Mapped QC analysis program☆44Updated 7 years ago
- Plot CNV data with a genome viewer in R☆15Updated 8 years ago
- Variant caller GUI + genetic disease analysis☆22Updated 5 years ago
- Please consider using/contributing to https://github.com/nf-core/sarek☆41Updated 4 years ago