brentp / somalierLinks
fast sample-swap and relatedness checks on BAMs/CRAMs/VCFs/GVCFs... "like damn that is one smart wine guy"
☆291Updated this week
Alternatives and similar repositories for somalier
Users that are interested in somalier are comparing it to the libraries listed below
Sorting:
- genetic variant expressions, annotation, and filtering for great good.☆265Updated last month
- GRIDSS: the Genomic Rearrangement IDentification Software Suite☆274Updated 4 months ago
- Annotation and Ranking of Structural Variation☆263Updated 2 weeks ago
- Tools for working with genomic and high throughput sequencing data.☆345Updated last week
- structural variant calling and genotyping with existing tools, but, smoothly.☆257Updated last year
- A tool for estimating repeat sizes☆198Updated last year
- fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing☆776Updated 3 weeks ago
- Bayesian haplotype-based mutation calling☆319Updated last week
- This Snakemake pipeline implements the GATK best-practices workflow☆259Updated 2 years ago
- BEDOPS: high-performance genomic feature operations☆351Updated 5 months ago
- a tool for CNV discovery and genotyping from depth-of-coverage by mapped reads☆228Updated 3 years ago
- annotate a VCF with other VCFs/BEDs/tabixed files☆383Updated last month
- Count bases in BAM/CRAM files☆318Updated 3 years ago
- lumpy: a general probabilistic framework for structural variant discovery☆333Updated 3 years ago
- VarDict☆198Updated last year
- DELLY2: Structural variant discovery by integrated paired-end and split-read analysis☆486Updated last month
- Structural variation and indel detection by local assembly☆246Updated 3 weeks ago
- classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF☆242Updated 2 months ago
- The nimble & robust variant annotator☆185Updated last year
- tools for adding mutations to existing .bam files, used for testing mutation callers☆244Updated 11 months ago
- software tools for haplotype assembly from sequence data☆222Updated 8 months ago
- Workflows for germline short variant discovery with GATK4☆138Updated 4 years ago
- GATK RNA-Seq Variant Calling in Nextflow☆136Updated 2 years ago
- Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data☆212Updated 5 years ago
- Plot structural variant signals from many BAMs and CRAMs☆553Updated last year
- Miscellaneous collection of Python and R scripts for processing Iso-Seq data☆275Updated 2 years ago
- a python extension of CNVnator -- a tool for CNV analysis from depth-of-coverage by mapped reads☆205Updated last week
- Variant calling and somatic mutation/CNV detection for next-generation sequencing data☆163Updated 2 years ago
- This repository contains chromosome/contig name mappings between UCSC <-> Ensembl <-> Gencode for a variety of genomes.☆243Updated 2 years ago
- Tools for processing and analyzing structural variants.☆154Updated 3 years ago