fast sample-swap and relatedness checks on BAMs/CRAMs/VCFs/GVCFs... "like damn that is one smart wine guy"
☆339Sep 30, 2026Updated 2 weeks ago
Alternatives and similar repositories for somalier
Users that are interested in somalier are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- genetic variant expressions, annotation, and filtering for great good.☆274May 12, 2026Updated 5 months ago
- seqcover allows users to view coverage for hundreds of genes and dozens of samples☆51Apr 9, 2021Updated 5 years ago
- structural variant calling and genotyping with existing tools, but, smoothly.☆266Jun 17, 2024Updated 2 years ago
- genotype :: ped correspondence check, ancestry check, sex check. directly, quickly on VCF☆152Feb 17, 2026Updated 7 months ago
- fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing☆878May 2, 2026Updated 5 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- annotate a VCF with other VCFs/BEDs/tabixed files☆403Jun 16, 2026Updated 3 months ago
- igv.js standalone page generator and automatic configuration to view bam/cram/vcf/bed. "working in under 1 minute"☆132Oct 14, 2025Updated last year
- Jasmine: SV Merging Across Samples☆262Dec 20, 2024Updated last year
- Plot structural variant signals from many BAMs and CRAMs☆574Jul 13, 2024Updated 2 years ago
- using all the bits for echt rapid variant annotation and filtering☆162Jul 22, 2026Updated 2 months ago
- don't get DUP'ed or DEL'ed by your putative SVs.☆109Dec 14, 2020Updated 5 years ago
- goleft is a collection of bioinformatics tools distributed under MIT license in a single static binary☆227Sep 18, 2025Updated last year
- Pipeline for structural variant image curation and analysis.☆49Dec 5, 2021Updated 4 years ago
- cython + htslib == fast VCF and BCF processing☆450Sep 10, 2026Updated last month
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- find large indels (in the blind spot between GATK/freebayes and SV callers)☆39Dec 3, 2017Updated 8 years ago
- Personal Cancer Genome Reporter (PCGR)☆284Updated this week
- Structural variant toolkit for VCFs☆424Oct 3, 2026Updated last week
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆59Feb 17, 2022Updated 4 years ago
- Microassembly based somatic variant caller for NGS data☆153Jun 23, 2022Updated 4 years ago
- RTG Tools: Utilities for accurate VCF comparison and manipulation☆337May 27, 2025Updated last year
- verifyBamID2: A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.☆111Sep 25, 2026Updated 2 weeks ago
- nim wrapper for htslib for parsing genomics data files☆159Sep 30, 2026Updated 2 weeks ago
- Detect novel (and reference) STR expansions from short-read data☆72Dec 6, 2025Updated 10 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)☆146Aug 24, 2025Updated last year
- Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.☆98Apr 20, 2026Updated 5 months ago
- The next version of bwa-mem☆865Oct 15, 2025Updated 11 months ago
- The D4 Quantitative Data Format☆176Nov 28, 2025Updated 10 months ago
- Software program for checking sample matching for NGS data☆144Jun 20, 2024Updated 2 years ago
- Scalable gVCF merging and joint variant calling for population sequencing projects☆190Apr 12, 2024Updated 2 years ago
- Structural Variant Index☆77Jul 1, 2026Updated 3 months ago
- (WIP) best-practices workflow for rare disease☆64Jul 1, 2024Updated 2 years ago
- Analysis pipeline for cancer sequencing data☆112Sep 28, 2026Updated 2 weeks ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Fast fusion detection using kallisto☆80Jun 11, 2025Updated last year
- overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites☆34Jun 6, 2025Updated last year
- ☆82Nov 30, 2018Updated 7 years ago
- an API for intersections of genomic data☆149Oct 4, 2026Updated last week
- Flexible, uncertainty-aware variant calling with parameter free filtration via FDR control.☆141Updated this week
- Haplotype VCF comparison tools☆474Dec 7, 2023Updated 2 years ago
- A read extraction and realignment tool for next generation sequencing data☆107Oct 29, 2022Updated 3 years ago