hammerlab / awesome-clonalityLinks
A curated list of awesome clonality and tumor heterogeneity resources
☆15Updated 6 years ago
Alternatives and similar repositories for awesome-clonality
Users that are interested in awesome-clonality are comparing it to the libraries listed below
Sorting:
- Multi-sample cancer phylogeny reconstruction☆35Updated 8 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- A tool for Read Multi-Mapper Resolution☆24Updated 8 years ago
- Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.☆39Updated 2 years ago
- MSKCC Reis-Filho Lab pipeline thingy☆17Updated last month
- Texomer: Integrating Analysis of Cancer Genome and Transcriptome Sequencing Data☆21Updated 5 years ago
- Assembly of RNA reads to determine the effect of a cancer mutation on protein sequence☆25Updated last year
- ☆23Updated last month
- Expectation-Maximization algorithm for Allele-Specific Expression☆21Updated 2 years ago
- Chromatin segmentation in R☆19Updated 7 years ago
- Exon-exon splice junctions across SRA☆42Updated 4 years ago
- ☆14Updated 2 months ago
- Scripts and software supplement for "Gene-level differential analysis at transcript-level resolution" by Yi, Pimentel, Bray and Pachter☆19Updated 7 years ago
- A Framework to call Structural Variants from NGS based datasets☆22Updated 7 years ago
- v2.x of the microassembly based somatic variant caller☆23Updated 3 months ago
- miRge - microRNA alignment software for small RNA-seq data, now at v2.0☆27Updated 3 years ago
- Prepare Sailfish and Salmon output for downstream analysis☆42Updated 6 years ago
- Reconstructs complex variation using Bionano optical mapping data and breakpoint graph data☆19Updated last year
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year
- Fast fusion detection using kallisto☆79Updated 4 months ago
- Hotspot is a program for identifying genomic regions of local enrichment of short-read sequence tags.☆16Updated 11 years ago
- ☆13Updated 5 years ago
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer☆21Updated 4 years ago
- A method to identify structural variation from sequencing data in target regions☆32Updated 5 years ago
- ☆14Updated 2 years ago
- Tools to handle reads sequenced with unique molecular identifiers (UMIs).☆30Updated 8 years ago
- Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.☆19Updated 3 weeks ago
- This repository contains the code to run the ASCETS arm-level copy number events caller for targeted sequencing data. ASCETS produces arm…☆18Updated last year
- Identify cell barcodes from single-cell genomics sequencing experiments☆43Updated 3 years ago
- Filters for false-positive mutation calls in NGS☆34Updated 6 years ago