hammerlab / awesome-clonality
A curated list of awesome clonality and tumor heterogeneity resources
☆15Updated 5 years ago
Alternatives and similar repositories for awesome-clonality:
Users that are interested in awesome-clonality are comparing it to the libraries listed below
- Chromatin segmentation in R☆19Updated 7 years ago
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer☆21Updated 4 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year
- ☆21Updated last month
- ☆11Updated 6 years ago
- Expectation-Maximization algorithm for Allele-Specific Expression☆21Updated last year
- Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.☆38Updated last year
- A tool for Read Multi-Mapper Resolution☆23Updated 8 years ago
- MSKCC Reis-Filho Lab pipeline thingy☆17Updated 9 months ago
- Texomer: Integrating Analysis of Cancer Genome and Transcriptome Sequencing Data☆20Updated 4 years ago
- A Framework to call Structural Variants from NGS based datasets☆22Updated 7 years ago
- Simplify snpEff annotations for interesting cases☆22Updated 6 years ago
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆24Updated 9 years ago
- ImReP is a computational method for rapid and accurate profiling of the adaptive immune repertoire from regular RNA-Seq data.☆28Updated 5 years ago
- Visualization tool for temporal clonal evolution.☆17Updated 5 years ago
- Filters for false-positive mutation calls in NGS☆30Updated 6 years ago
- Scripts and software supplement for "Gene-level differential analysis at transcript-level resolution" by Yi, Pimentel, Bray and Pachter☆19Updated 7 years ago
- ☆14Updated last year
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated 2 years ago
- ☆12Updated 4 months ago
- Multi-sample cancer phylogeny reconstruction☆35Updated 7 years ago
- v2.x of the microassembly based somatic variant caller☆21Updated last week
- picking up low allelic-fraction, somatic variants from tumor samples☆14Updated 7 years ago
- Using k-mers to call HLA alleles in RNA sequencing data☆22Updated 6 years ago
- BigWig manpulation tools using libBigWig and htslib☆29Updated 8 months ago
- Differential ATAC-seq toolkit☆27Updated last year
- ☆9Updated 8 years ago
- A set of tools to annotate VCF files with expression and readcount data☆29Updated 2 months ago
- Structural variation and indel detection using rolling local string graph assembly☆9Updated 8 years ago