hammerlab / awesome-clonalityLinks
A curated list of awesome clonality and tumor heterogeneity resources
☆15Updated 6 years ago
Alternatives and similar repositories for awesome-clonality
Users that are interested in awesome-clonality are comparing it to the libraries listed below
Sorting:
- Multi-sample cancer phylogeny reconstruction☆36Updated 8 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- A tool for Read Multi-Mapper Resolution☆24Updated 8 years ago
- Assembly of RNA reads to determine the effect of a cancer mutation on protein sequence☆25Updated last year
- DRAGEN Tumor/Normal workflow post-processing☆25Updated 2 years ago
- ☆23Updated 3 weeks ago
- Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.☆40Updated 2 years ago
- Expectation-Maximization algorithm for Allele-Specific Expression☆21Updated 2 years ago
- Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneit…☆42Updated last year
- Tools to handle reads sequenced with unique molecular identifiers (UMIs).☆30Updated 8 years ago
- Using k-mers to call HLA alleles in RNA sequencing data☆23Updated 7 years ago
- Chromatin segmentation in R☆19Updated 8 years ago
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆49Updated 6 years ago
- Fast fusion detection using kallisto☆79Updated 8 months ago
- The Read Origin Protocol (ROP) is a computational protocol that aims to discover the source of all reads, including those originating fro…☆36Updated last year
- Visualization tool for temporal clonal evolution.☆18Updated 5 years ago
- Exon-exon splice junctions across SRA☆43Updated 4 years ago
- Fluff is a Python package that contains several scripts to produce pretty, publication-quality figures for next-generation sequencing exp…☆71Updated last year
- ☆26Updated 5 years ago
- Comprehensive Human Expressed SequenceS☆19Updated 6 months ago
- Filters for false-positive mutation calls in NGS☆34Updated 6 years ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated 2 years ago
- miRge - microRNA alignment software for small RNA-seq data, now at v2.0☆28Updated 3 years ago
- A Framework to call Structural Variants from NGS based datasets☆22Updated 8 years ago
- JAMM Peak Finder for Sequencing Datasets☆30Updated 5 years ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆25Updated 7 years ago
- fast webservices based query tool for large sets of genomic features☆25Updated 9 months ago
- Differential ATAC-seq toolkit☆28Updated 2 years ago
- Personal diploid genome creation and coordinate conversion☆30Updated 10 months ago
- A computational method for inferring the cancer cell fraction of tumour structural variation from whole-genome sequencing data.☆42Updated 5 months ago