hammerlab / awesome-clonalityLinks
A curated list of awesome clonality and tumor heterogeneity resources
☆15Updated 6 years ago
Alternatives and similar repositories for awesome-clonality
Users that are interested in awesome-clonality are comparing it to the libraries listed below
Sorting:
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer☆21Updated 4 years ago
- A tool for Read Multi-Mapper Resolution☆23Updated 8 years ago
- Chromatin segmentation in R☆19Updated 7 years ago
- ☆21Updated 2 months ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- Multi-sample cancer phylogeny reconstruction☆35Updated 7 years ago
- DRAGEN Tumor/Normal workflow post-processing☆22Updated last year
- BigWig manpulation tools using libBigWig and htslib☆29Updated 10 months ago
- ☆12Updated 5 years ago
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 6 years ago
- Filters for false-positive mutation calls in NGS☆30Updated 6 years ago
- Comprehensive Human Expressed SequenceS☆17Updated 10 months ago
- A set of tools to annotate VCF files with expression and readcount data☆29Updated 3 months ago
- Modeling and correcting fragment sequence bias for RNA-seq☆24Updated last year
- fast webservices based query tool for large sets of genomic features☆25Updated last month
- Simplify snpEff annotations for interesting cases☆22Updated 6 years ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 4 years ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆26Updated 7 years ago
- Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.☆38Updated 2 years ago
- Differential ATAC-seq toolkit☆27Updated last year
- Expectation-Maximization algorithm for Allele-Specific Expression☆21Updated 2 years ago
- ☆12Updated last month
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆29Updated 10 months ago
- Improved multi-sample transcript abundance estimates using adaptive priors☆20Updated 6 years ago
- A program for fast and accurate genome-guided transcripts reconstruction and quantification from RNA-seq (Supporting Pacbio single-end)☆23Updated 4 years ago
- Personal diploid genome creation and coordinate conversion☆29Updated 2 months ago
- Visualization tool for temporal clonal evolution.☆17Updated 5 years ago
- Scripts and software supplement for "Gene-level differential analysis at transcript-level resolution" by Yi, Pimentel, Bray and Pachter☆19Updated 7 years ago
- A Framework to call Structural Variants from NGS based datasets☆22Updated 7 years ago