Alexamk / decRiPPterLinks
Genome mining tool for novel RiPP BGCs
☆14Updated 2 years ago
Alternatives and similar repositories for decRiPPter
Users that are interested in decRiPPter are comparing it to the libraries listed below
Sorting:
- Multi-class signal peptide prediction and structure decoding model.☆93Updated 6 months ago
- A quick and easy way to download the genomes/predicted proteins of taxa available in JGI's Genome Portal.☆37Updated 2 months ago
- An R package to calculate indices and theoretical physicochemical properties of peptides and protein sequences.☆89Updated last year
- snakemake pipeline for creating trees from sequence sets☆85Updated 3 months ago
- Protein structure alignment and search algorithm☆70Updated this week
- Using MASST or fastMASST, adding metadata onto a tree ontology for microbes☆21Updated this week
- A machine learning model for the prediction of optimal growth temperature of microorganisms and enzyme catalytic optima☆58Updated 4 years ago
- BGC Detection and Classification Using Deep Learning☆152Updated last year
- UniProt Id Mapping through API☆35Updated 11 months ago
- a pipeline to build similarity maps of protein space☆36Updated 8 months ago
- A CLI for pairwise alignment of sequences, using both normal and mass based alignment.☆13Updated 2 months ago
- Protein 3D structure prediction pipeline☆86Updated last week
- Comprehensive Python client for the Uniprot REST API☆51Updated 2 months ago
- scripts for predicting natural product activity from biosynthetic gene cluster sequences☆23Updated 2 months ago
- Protein Sequence Annotation with Language Models☆23Updated 3 months ago
- A Rich renderable for viewing Multiple Sequence Alignments in the terminal.☆85Updated 3 years ago
- DeepECtransformer☆26Updated last year
- Untargeted metabolomics workflow for large-scale data processing and analysis implemented in Snakemake☆27Updated 7 months ago
- ☆11Updated 8 months ago
- ☆27Updated last year
- MSA(Multiple Sequence Alignment) visualization python package for sequence analysis☆147Updated 9 months ago
- ☆14Updated 8 years ago
- MMseqs2 app to run on your workstation or servers☆94Updated this week
- MicrobeRX☆11Updated 3 weeks ago
- Python Implementation of Codon Adaption Index☆37Updated 2 years ago
- Visualise RNA secondary structure in consistent, reproducible and recognisable layouts☆74Updated last month
- Automatic oligonucleotide design for PCR-based gene synthesis☆47Updated 6 years ago
- Template-based RNA secondary structure visualization☆26Updated 9 months ago
- Pipeline for searching and aligning contact maps for proteins, then running DeepFri's GCN.☆40Updated 2 months ago
- Nature Biotechnology: Ultra-fast, sensitive detection of protein remote homologs using deep dense retrieval☆119Updated last year