Alternatives and similar repositories for decRiPPter

Users that are interested in decRiPPter are comparing it to the libraries listed below

• tlawrence3 / amPEPpy
  ☆29Updated last year
• guyleonard / get_jgi_genomes
  A quick and easy way to download the genomes/predicted proteins of taxa available in JGI's Genome Portal.
  ☆38Updated 7 months ago
• allie-walker / Natural-product-function
  scripts for predicting natural product activity from biosynthetic gene cluster sequences
  ☆24Updated 3 months ago
• iquasere / UPIMAPI
  UniProt Id Mapping through API
  ☆36Updated 3 months ago
• fteufel / signalp-6.0
  Multi-class signal peptide prediction and structure decoding model.
  ☆102Updated 11 months ago
• EngqvistLab / Tome
  A machine learning model for the prediction of optimal growth temperature of microorganisms and enzyme catalytic optima
  ☆63Updated 5 years ago
• Merck / deepbgc
  BGC Detection and Classification Using Deep Learning
  ☆157Updated 2 years ago
• barricklab / ostir
  Software for predicting translation initiation rates in bacteria
  ☆30Updated 5 months ago
• rcedgar / reseek
  Protein structure alignment and search algorithm
  ☆77Updated last week
• medema-group / bigslice
  A highly scalable, user-interactive tool for the large scale analysis of Biosynthetic Gene Clusters data
  ☆92Updated 5 months ago
• DessimozLab / fold_tree
  snakemake pipeline for creating trees from sequence sets
  ☆94Updated 2 months ago
• nf-core / proteinfold
  Protein 3D structure prediction pipeline
  ☆94Updated this week
• Jaimomar99 / deeplocpro
  DeepLocPro repository.
  ☆14Updated last year
• Russel88 / CRISPRCasTyper
  CCTyper: Automatic detection and subtyping of CRISPR-Cas operons
  ☆106Updated last year
• soedinglab / spacedust
  Discovery of conserved gene clusters in multiple genomes
  ☆120Updated 7 months ago
• EnzoAndree / HmmPy
  A Pure-Python parser of HMMER3 output
  ☆18Updated last year
• Finn-Lab / SanntiS
  SMBGC Annotation using Neural Networks Trained on Interpro Signatures
  ☆29Updated 9 months ago
• cultivarium / GenomeSPOT
  Predict oxygen, temperature, salinity, and pH preferences of bacteria and archaea from a genome
  ☆61Updated 9 months ago
• MiguelMSandin / SSNetworks
  A brief, quick and dirty introduction to Sequence Similarity Networks
  ☆32Updated 3 years ago
• IndexThePlanet / Logan
  Logan Unitigs and Contigs
  ☆181Updated 3 months ago
• kaistsystemsbiology / DeepProZyme
  DeepECtransformer
  ☆29Updated 2 years ago
• HobnobMancer / cazy_webscraper
  Web scraper to retrieve protein data catalogued by the CAZy, UniProt, NCBI, GTDB and PDB websites/databases.
  ☆16Updated this week
• bcgsc / AMPlify
  Attentive deep learning model for antimicrobial peptide prediction
  ☆55Updated 9 months ago
• Merck / bgc-pipeline
  ☆12Updated last year
• soedinglab / plass
  sensitive and precise assembly of short sequencing reads
  ☆163Updated last year
• soedinglab / MMseqs
  ☆14Updated 9 years ago
• GRONINGEN-MICROBIOME-CENTRE / MicrobeRX
  MicrobeRX
  ☆14Updated 5 months ago
• Arcadia-Science / ProteinCartography
  A pipeline to build similarity maps of protein space
  ☆40Updated 2 months ago
• gamcil / synthaser
  Parse NCBI CD-search results to find and visualise the domain architecture of secondary metabolite synthases
  ☆23Updated 3 years ago
• althonos / pyfamsa
  Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence alignments.
  ☆37Updated this week