Alternatives and similar repositories for decRiPPter:

Users that are interested in decRiPPter are comparing it to the libraries listed below

• allie-walker / Natural-product-function
  scripts for predicting natural product activity from biosynthetic gene cluster sequences
  ☆23Updated 2 years ago
• dosorio / Peptides
  An R package to calculate indices and theoretical physicochemical properties of peptides and protein sequences.
  ☆82Updated last year
• ThomasCMcLean / LazyAF
  Code for LazyAF pipeline
  ☆21Updated last year
• Merck / bgc-pipeline
  ☆11Updated 3 months ago
• guyleonard / get_jgi_genomes
  A quick and easy way to download the genomes/predicted proteins of taxa available in JGI's Genome Portal.
  ☆35Updated 6 months ago
• biosustain / snakemake_UmetaFlow
  Untargeted metabolomics workflow for large-scale data processing and analysis implemented in Snakemake
  ☆25Updated 2 months ago
• EngqvistLab / Tome
  A machine learning model for the prediction of optimal growth temperature of microorganisms and enzyme catalytic optima
  ☆55Updated 4 years ago
• fteufel / signalp-6.0
  Multi-class signal peptide prediction and structure decoding model.
  ☆83Updated last month
• robinschmid / microbe_masst
  Using MASST or fastMASST, adding metadata onto a tree ontology for microbes
  ☆18Updated last week
• Rostlab / ConSurf
  Evolutionary conservation estimation of residues or nucleotides
  ☆37Updated 3 years ago
• iquasere / UPIMAPI
  UniProt Id Mapping through API
  ☆31Updated 5 months ago
• althonos / pyfamsa
  Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence alignments.
  ☆31Updated 3 weeks ago
• rcedgar / reseek
  Protein structure alignment and search algorithm
  ☆59Updated this week
• MiguelMSandin / SSNetworks
  A brief, quick and dirty introduction to Sequence Similarity Networks
  ☆21Updated 2 years ago
• multimeric / Unipressed
  Comprehensive Python client for the Uniprot REST API
  ☆46Updated 7 months ago
• bioinf-mcb / Metagenomic-DeepFRI
  Pipeline for searching and aligning contact maps for proteins, then running DeepFri's GCN.
  ☆37Updated 3 months ago
• tlawrence3 / amPEPpy
  ☆24Updated last year
• BernhoferM / TMbed
  Transmembrane proteins predicted through Language Model embeddings
  ☆35Updated 2 months ago
• davidhoover / DNAWorks
  Automatic oligonucleotide design for PCR-based gene synthesis
  ☆43Updated 5 years ago
• Benjamin-Lee / CodonAdaptationIndex
  Python Implementation of Codon Adaption Index
  ☆37Updated 2 years ago
• amaurypm / pseqsid
  Calculates pairwise sequence identity, similarity and normalized similarity score of proteins in a multiple sequence alignment.
  ☆14Updated last year
• harmslab / topiary
  Python framework for doing ancestral sequence reconstruction
  ☆38Updated 8 months ago
• Finn-Lab / SanntiS
  SMBGC Annotation using Neural Networks Trained on Interpro Signatures
  ☆26Updated 3 weeks ago
• Arcadia-Science / ProteinCartography
  a pipeline to build similarity maps of protein space
  ☆33Updated 3 months ago
• mmzdouc / FERMO
  Dashboard for analysis of liquid chromatography (tandem) mass spectrometry data.
  ☆33Updated 5 months ago
• BolognaBiocomp / deepsig
  DeepSig - Predictor of signal peptides in proteins based on deep learning
  ☆26Updated 2 years ago
• DessimozLab / fold_tree
  snakemake pipeline for creating trees from sequence sets
  ☆76Updated 2 weeks ago
• dincarnato / RNAFramework
  RNA structure probing and post-transcriptional modifications mapping high-throughput data analysis
  ☆38Updated 3 weeks ago
• NBChub / bgcflow
  Snakemake workflow for the analysis of biosynthetic gene clusters across large collections of genomes (pangenomes)
  ☆41Updated 3 months ago
• Protein-Sequence-Annotation / PSALM
  Protein Sequence Annotation with Language Models
  ☆19Updated 5 months ago