Alternatives and similar repositories for decRiPPter

Users that are interested in decRiPPter are comparing it to the libraries listed below

• fteufel / signalp-6.0
  Multi-class signal peptide prediction and structure decoding model.
  ☆90Updated 6 months ago
• dosorio / Peptides
  An R package to calculate indices and theoretical physicochemical properties of peptides and protein sequences.
  ☆89Updated last year
• iquasere / UPIMAPI
  UniProt Id Mapping through API
  ☆34Updated 10 months ago
• rcedgar / reseek
  Protein structure alignment and search algorithm
  ☆66Updated last week
• Merck / deepbgc
  BGC Detection and Classification Using Deep Learning
  ☆152Updated last year
• nf-core / proteinfold
  Protein 3D structure prediction pipeline
  ☆84Updated this week
• EngqvistLab / Tome
  A machine learning model for the prediction of optimal growth temperature of microorganisms and enzyme catalytic optima
  ☆57Updated 4 years ago
• guyleonard / get_jgi_genomes
  A quick and easy way to download the genomes/predicted proteins of taxa available in JGI's Genome Portal.
  ☆37Updated 2 months ago
• Arcadia-Science / ProteinCartography
  a pipeline to build similarity maps of protein space
  ☆36Updated 8 months ago
• DessimozLab / fold_tree
  snakemake pipeline for creating trees from sequence sets
  ☆85Updated 2 months ago
• allie-walker / Natural-product-function
  scripts for predicting natural product activity from biosynthetic gene cluster sequences
  ☆23Updated 2 months ago
• kaistsystemsbiology / DeepProZyme
  DeepECtransformer
  ☆26Updated last year
• barricklab / ostir
  Software for predicting translation initiation rates in bacteria
  ☆29Updated last week
• tlawrence3 / amPEPpy
  ☆26Updated last year
• GRONINGEN-MICROBIOME-CENTRE / MicrobeRX
  MicrobeRX
  ☆11Updated 4 months ago
• Merck / bgc-pipeline
  ☆11Updated 8 months ago
• moshi4 / pyMSAviz
  MSA(Multiple Sequence Alignment) visualization python package for sequence analysis
  ☆139Updated 8 months ago
• Protein-Sequence-Annotation / PSALM
  Protein Sequence Annotation with Language Models
  ☆23Updated 2 months ago
• nmatzke / 3diphy
  Maximum likelihood structural phylogenetics by including Foldseek 3Di characters. Supporting Information for Puente-Lelievre et al. 2023n…
  ☆21Updated 3 months ago
• robinschmid / microbe_masst
  Using MASST or fastMASST, adding metadata onto a tree ontology for microbes
  ☆21Updated 4 months ago
• multimeric / Unipressed
  Comprehensive Python client for the Uniprot REST API
  ☆50Updated last month
• harmslab / topiary
  Python framework for doing ancestral sequence reconstruction
  ☆39Updated last year
• bioinf-mcb / Metagenomic-DeepFRI
  Pipeline for searching and aligning contact maps for proteins, then running DeepFri's GCN.
  ☆40Updated last month
• bcgsc / AMPlify
  Attentive deep learning model for antimicrobial peptide prediction
  ☆51Updated 4 months ago
• soedinglab / MMseqs
  ☆14Updated 8 years ago
• r2dt-bio / R2DT
  Visualise RNA secondary structure in consistent, reproducible and recognisable layouts
  ☆74Updated 2 weeks ago
• amaurypm / pseqsid
  Calculates pairwise sequence identity, similarity and normalized similarity score of proteins in a multiple sequence alignment.
  ☆17Updated last year
• VivianMonzon / Reciprocal_Best_Structure_Hits
  ☆11Updated 2 years ago
• snijderlab / align-cli
  A CLI for pairwise alignment of sequences, using both normal and mass based alignment.
  ☆13Updated last month
• althonos / rich-msa
  A Rich renderable for viewing Multiple Sequence Alignments in the terminal.
  ☆85Updated 3 years ago