Genome mining tool for novel RiPP BGCs
☆16Jul 6, 2023Updated 3 years ago
Alternatives and similar repositories for decRiPPter
Users that are interested in decRiPPter are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- a metabologenomic pipeline integrating metabolomic and genomic data to identify novel RiPPs and their BGCs☆12Oct 4, 2021Updated 5 years ago
- Code for LazyAF pipeline☆23Feb 12, 2024Updated 2 years ago
- Scripts for antiSMASH/MiBIG data extraction and manipulation☆14May 23, 2024Updated 2 years ago
- Ms2 basEd saMple vectOrization (memo) package☆17Jun 13, 2023Updated 3 years ago
- The Biosynthetic Gene cluster Meta’omics abundance Profiler (BiG-MAP). A command-line tool that is able to profile the abundance and expr…☆35Jan 27, 2026Updated 9 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- protein utilities in Rust☆33Updated this week
- Find clustered hits from a BLAST search☆153Aug 6, 2026Updated 3 months ago
- Rust data structures and client for the PubChem REST API☆14Mar 20, 2023Updated 3 years ago
- BGC Detection and Classification Using Deep Learning☆162Nov 11, 2023Updated 2 years ago
- Gupta et al., TaxiBGC: a Taxonomy-guided Approach for Profiling Experimentally Characterized Microbial Biosynthetic Gene Clusters and Sec…☆17May 24, 2023Updated 3 years ago
- ☆19Mar 20, 2025Updated last year
- Bioinformatic Tools for study Evolution of metabolic diversity☆42Feb 27, 2024Updated 2 years ago
- Snakemake workflow for the analysis of biosynthetic gene clusters across large collections of genomes (pangenomes)☆55May 16, 2026Updated 5 months ago
- ☆12Jun 18, 2020Updated 6 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Base image providing dependencies for ASKCOS Docker images☆12Jun 14, 2024Updated 2 years ago
- Build and deploy cross platform bioinformatic utilities with Rust.☆19Apr 1, 2025Updated last year
- Flexible pipeline for building Sequence Similarity Networks, Genome Neighborhood Networks, and Genome Neighborhood Diagrams for the purpo…☆12Updated this week
- A Python interface to gb-io, a fast GenBank parser written in Rust.☆25May 21, 2026Updated 5 months ago
- SMBGC Annotation using Neural Networks Trained on Interpro Signatures☆32Updated this week
- A simple-to-use tool for visualizing and comparing genome contexts for numerous genomes☆18Dec 1, 2025Updated 11 months ago
- bgzip support for Rust☆18Nov 16, 2023Updated 2 years ago
- scripts for predicting natural product activity from biosynthetic gene cluster sequences☆30Mar 16, 2026Updated 7 months ago
- Parse NCBI CD-search results to find and visualise the domain architecture of secondary metabolite synthases☆26Nov 9, 2022Updated 3 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆14Dec 19, 2025Updated 10 months ago
- Mass Spec Query Language (MassQL) support for Spectra☆10Apr 30, 2026Updated 6 months ago
- ☆12Oct 27, 2026Updated last week
- ☆32Updated this week
- Clustering of MS² Spectra for Metabolite Identification☆10Apr 2, 2022Updated 4 years ago
- Scripts used in the publication Tyler P. Barnum, Israel A. Figueroa, Charlotte I. Carlström, Lauren N. Lucas, Anna L. Engelbrektson, and …☆10Jun 19, 2019Updated 7 years ago
- A suite of javascript apps for visualizing sequencing data☆12Nov 18, 2013Updated 12 years ago
- A Rust library for parsing, writing and manipulating Genbank sequence files☆25Apr 20, 2025Updated last year
- PowerBacGWAS: Power calculations for Bacterial GWAS☆13Feb 2, 2022Updated 4 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- a fast, interactive, light-weight, customizable, web-based comparative genomics viewer with simple text input format.☆10Aug 5, 2011Updated 15 years ago
- A gui overlay and extension for MSGFplus☆10Apr 3, 2017Updated 9 years ago
- A metagenomic strategy for harnessing the chemical repertoire of the human microbiome☆33Updated this week
- A pipeline for lightweight screening of Eukaryotic genomes and transcriptomes for recent HGT☆14Aug 26, 2025Updated last year
- Apply AI-based trait prediction from BacDive to your own genomes.☆16Nov 12, 2024Updated last year
- ☆14Jun 1, 2026Updated 5 months ago
- A brief, quick and dirty introduction to Sequence Similarity Networks☆32Dec 22, 2022Updated 3 years ago