petercim / ClusterFinder
Predicting biosynthetic gene clusters in genomes
☆36Updated 11 years ago
Alternatives and similar repositories for ClusterFinder:
Users that are interested in ClusterFinder are comparing it to the libraries listed below
- Bacterial Annotation by Learned Representation of Genes☆55Updated 4 years ago
- DeepSig - Predictor of signal peptides in proteins based on deep learning☆26Updated last year
- BiG-MEx implementation as Docker images and R packages☆12Updated 3 years ago
- ☆31Updated 3 years ago
- Convert genbank files to a swath of other formats☆16Updated last year
- http://www.combio.pl/alfree☆23Updated 2 years ago
- The software involved in the MetaPhase project, as described in G3 (http://dx.doi.org/10.1534/g3.114.011825)☆16Updated 6 years ago
- SMBGC Annotation using Neural Networks Trained on Interpro Signatures☆25Updated this week
- Reference Phylogeny for Bacterial and Archaeal Genomes☆25Updated 2 years ago
- Python bindings for the TaxonKit library☆33Updated 2 months ago
- Python package for common tasks in bioinformatic.☆13Updated last year
- Find Unique genomic Regions☆29Updated last month
- Protein Alignment and Detection Interface☆61Updated 11 months ago
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆30Updated 3 years ago
- Code for detecting genomic island insertions in clades of microbes.☆19Updated last year
- StrainFinder☆26Updated 6 years ago
- PanGenomePipeline☆15Updated 10 months ago
- FishTaco (Functional Shifts Taxonomic Contributors) is a metagenomic computational framework that aims to identify the driver taxa of mic…☆24Updated 3 years ago
- A metagenomic strategy for harnessing the chemical repertoire of the human microbiome☆32Updated last year
- 🧬 MSABrowser: dynamic and fast visualization of sequence alignments, variations, and annotations☆31Updated 9 months ago
- ☆19Updated 8 years ago
- Pipeline for major biological analyses.☆34Updated 2 years ago
- MicrobeDirectory 2.0☆22Updated 4 years ago
- ☆26Updated 4 years ago
- A repository for the lessons and notebooks used for Binder tutorials☆13Updated 4 years ago
- metabolic heatmap☆19Updated 5 years ago
- Create and maintain phylogenetic "reference packages" of biological sequences.☆22Updated 2 weeks ago
- ProkEvo - an automated, reproducible, and scalable framework for high-throughput bacterial population genomics analyses.☆18Updated 3 years ago
- This program dereplicates and/or filter nucleotide and/or protein database from a list of names or sequences (by exact match).☆15Updated 5 years ago
- Combining de novo and reference-guided assembly with Scaffold_builder☆19Updated 3 years ago