midas-wyss / sweettalk

Related projects ⓘ

Alternatives and complementary repositories for sweettalk

• konstin / knn-for-homology
  Repository for "Nearest neighbor search on embeddings rapidly identifies distant protein relations"
  ☆11Updated last year
• mobiusklein / glypy
  Glycan Analysis and Glycoinformatics Library for Python
  ☆31Updated 2 months ago
• brianhie / evolocity
  Evolutionary velocity with protein language models
  ☆83Updated last year
• andyposbe / ColabFold-Pipeline-Toolkit
  The aim of this repository is to provide simple tools to help those working with ColabFold BATCH both for pre and post-processing steps.
  ☆16Updated 9 months ago
• BojarLab / glycowork
  Package for processing and analyzing glycans and their role in biology.
  ☆57Updated this week
• TurtleTools / caretta
  A software-suite to perform multiple protein structure alignment and structure feature extraction.
  ☆27Updated last year
• tyo-nu / MINE-Database
  Metabolic In silico Network Expansion (MINE) Database Construction and DB Logic
  ☆19Updated 9 months ago
• wrf / pdbcolor
  Python code to color a PDB structure based on parameters from a multiple sequence alignment
  ☆32Updated last year
• Arcadia-Science / ProteinCartography
  a pipeline to build similarity maps of protein space
  ☆30Updated 4 months ago
• TurtleTools / geometricus
  A structure-based, alignment-free embedding approach for proteins. Can be used as input to machine learning algorithms.
  ☆38Updated last year
• TattaBio / OMG
  ☆27Updated 3 months ago
• kaistsystemsbiology / DeepProZyme
  DeepECtransformer
  ☆22Updated last year
• andrewguy / biostructmap
  A Python package for mapping sequence aligned data onto protein structures
  ☆34Updated 3 years ago
• TattaBio / DGEB
  Diverse Genomic Embedding Benchmark
  ☆37Updated last month
• jurgjn / af-protein-universe
  ☆21Updated last year
• amckenna41 / aaindex
  Python package for AAIndex database (https://www.genome.jp/aaindex/)
  ☆9Updated last year
• bioinf-mcb / Metagenomic-DeepFRI
  Pipeline for searching and aligning contact maps for proteins, then running DeepFri's GCN.
  ☆32Updated 2 months ago
• debbiemarkslab / variational-synthesis
  Repository for the paper "Optimal design of stochastic DNA synthesis protocols based on generative sequence models" (Weinstein et al., AI…
  ☆28Updated 2 years ago
• nmatzke / 3diphy
  Maximum likelihood structural phylogenetics by including Foldseek 3Di characters. Supporting Information for Puente-Lelievre et al. 2023n…
  ☆18Updated 5 months ago
• debbiemarkslab / EVmutation
  Mutation effects predicted from sequence co-variation
  ☆61Updated 7 years ago
• spetti / SMURF
  ☆130Updated 2 years ago
• MedChaabane / deepRAM
  End-to-end deep learning toolkit for predicting protein binding sites and motifs.
  ☆44Updated 5 years ago
• ShintaroMinami / mican
  Non-sequential structural alignment program for protein structure
  ☆17Updated last month
• johli / seqprop
  Stochastic Sequence Propagation - A Keras Model for optimizing DNA, RNA and protein sequences based on a predictor
  ☆42Updated 3 months ago
• Protein-Sequence-Annotation / PSALM
  Protein Sequence Annotation with Language Models
  ☆16Updated last month
• althonos / pyfamsa
  Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence alignments.
  ☆29Updated 2 weeks ago
• harmslab / topiary
  Python framework for doing ancestral sequence reconstruction
  ☆34Updated 4 months ago
• jertubiana / ProteinMotifRBM
  Learning Protein Constitutive Motifs from Sequence Data: RBM toolbox
  ☆20Updated 5 years ago
• multimeric / Unipressed
  Comprehensive Python client for the Uniprot REST API
  ☆44Updated 3 months ago