midas-wyss / sweettalkLinks
Deep learning-based language model for glycan sequences
☆16Updated 5 years ago
Alternatives and similar repositories for sweettalk
Users that are interested in sweettalk are comparing it to the libraries listed below
Sorting:
- Repository for "Nearest neighbor search on embeddings rapidly identifies distant protein relations"☆13Updated 2 years ago
- DeepECtransformer☆26Updated last year
- Prediction of protein substitution impact using a directional substitution matrix and homolog alignments☆12Updated 3 years ago
- Protein Sequence Annotation with Language Models☆23Updated 2 months ago
- ☆43Updated 11 months ago
- Package for processing and analyzing glycans and their role in biology.☆71Updated last week
- The Complete Python Antibody Library☆24Updated 3 months ago
- Python code to color a PDB structure based on parameters from a multiple sequence alignment☆32Updated last year
- Natural Product Discovery tools -- a toolkit containing various pipelines for in silico analysis of natural product mass spectrometry da…☆28Updated 2 years ago
- Metabolic In silico Network Expansion (MINE) Database Construction and DB Logic☆19Updated last year
- Diverse Genomic Embedding Benchmark☆46Updated 4 months ago
- Evolutionary velocity with protein language models☆93Updated last year
- A software-suite to perform multiple protein structure alignment and structure feature extraction.☆30Updated 2 years ago
- ☆47Updated 8 months ago
- Interpretable genotype-phenotype landscape modeling☆35Updated last year
- ☆132Updated 2 years ago
- GraphPart, a data partitioning method for ML on biological sequences☆28Updated last year
- Genome mining tool for novel RiPP BGCs☆14Updated 2 years ago
- ProtSpace is program that helps in visualizing and investigating our protein embedding space.☆28Updated this week
- Mutation effects predicted from sequence co-variation☆66Updated 7 years ago
- A Python package for mapping sequence aligned data onto protein structures☆35Updated 4 years ago
- Code, intermediate results and an interactive visualisation on prediction of putative novel enzymes and small molecule binding proteins p…☆26Updated 2 years ago
- ProtNote is a multimodal deep learning model that leverages free-form text to enable both supervised and zero-shot protein function predi…☆53Updated 3 months ago
- Pipeline for searching and aligning contact maps for proteins, then running DeepFri's GCN.☆40Updated last month
- Python framework for doing ancestral sequence reconstruction☆39Updated last year
- A structure-based, alignment-free embedding approach for proteins. Can be used as input to machine learning algorithms.☆39Updated 2 years ago
- Reaction Analysis through Imaging of Chemical Units☆16Updated 9 months ago
- A machine learning model for the prediction of optimal growth temperature of microorganisms and enzyme catalytic optima☆57Updated 4 years ago
- a pipeline to build similarity maps of protein space☆36Updated 8 months ago
- A Python API for estimating statistical high-order epistasis in genotype-phenotype maps.☆35Updated last year