Alternatives and similar repositories for RAIChU

Users that are interested in RAIChU are comparing it to the libraries listed below

• kaistsystemsbiology / DeepProZyme
  DeepECtransformer
  ☆26Updated last year
• harmslab / topiary
  Python framework for doing ancestral sequence reconstruction
  ☆38Updated last year
• Merck / bgc-pipeline
  ☆11Updated 7 months ago
• glygen-glycan-data / PyGly
  Python module for parsing, writing, aligning, and manipulating glycan structrures
  ☆10Updated last week
• psipred / merizo_search
  Fast protein domain structure embedding+search tool
  ☆21Updated last month
• tsenoner / protspace
  ProtSpace is program that helps in visualizing and investigating our protein embedding space.
  ☆26Updated this week
• EngqvistLab / Tome
  A machine learning model for the prediction of optimal growth temperature of microorganisms and enzyme catalytic optima
  ☆57Updated 4 years ago
• labstructbioinf / pLM-BLAST
  Detection of remote homology by comparison of protein language model representations
  ☆54Updated 7 months ago
• nmatzke / 3diphy
  Maximum likelihood structural phylogenetics by including Foldseek 3Di characters. Supporting Information for Puente-Lelievre et al. 2023n…
  ☆21Updated 2 months ago
• Zsailer / pyasr
  Ancestral Sequence Reconstruction in Python
  ☆14Updated 6 years ago
• althonos / mini3di
  A NumPy port of the foldseek code for encoding protein structures to 3di.
  ☆58Updated 4 months ago
• JudeWells / chainsaw
  ☆41Updated 9 months ago
• rcedgar / reseek
  Protein structure alignment and search algorithm
  ☆63Updated last week
• andyposbe / ColabFold-Pipeline-Toolkit
  The aim of this repository is to provide simple tools to help those working with ColabFold BATCH both for pre and post-processing steps.
  ☆16Updated last year
• jbloomlab / SARS2-mut-fitness
  Observed substitution counts of SARS-CoV-2 compared to those expected under the mutation rates
  ☆20Updated 8 months ago
• bioinf-mcb / Metagenomic-DeepFRI
  Pipeline for searching and aligning contact maps for proteins, then running DeepFri's GCN.
  ☆40Updated 3 weeks ago
• BernhoferM / TMbed
  Transmembrane proteins predicted through Language Model embeddings
  ☆37Updated 2 months ago
• althonos / pyfamsa
  Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence alignments.
  ☆32Updated last month
• fermo-metabolomics / FERMO
  Dashboard for analysis of liquid chromatography (tandem) mass spectrometry data.
  ☆32Updated 2 months ago
• NPLinker / nplinker
  A python framework for microbial natural products data mining by integrating genomics and metabolomics data
  ☆20Updated this week
• CongLabCode / DPAM
  A domain parser for Alphafold models
  ☆38Updated last year
• phiweger / foldvis
  Protein visualization without the pain
  ☆9Updated 2 years ago
• vttresearch / ActSeek
  Protein discovery tool for mining in the Alphafold database based on the position of few amino acids.
  ☆22Updated last month
• maovshao / PLMSearch
  PLMSearch enables accurate and fast homologous protein search with only sequences as input
  ☆73Updated 7 months ago
• tlawrence3 / amPEPpy
  ☆24Updated last year
• iomega / ms2query
  MS2Query - machine learning assisted library querying of MS/MS spectra
  ☆45Updated last month
• TattaBio / gLM2
  ☆70Updated 9 months ago
• brsynth / rp2paths
  RetroPath2.0 to pathways
  ☆17Updated 3 weeks ago
• madeleineernst / pyMolNetEnhancer
  ☆20Updated 2 years ago
• althonos / peptides.py
  Physicochemical properties, indices and descriptors for amino-acid sequences.
  ☆99Updated 3 months ago