caitiecollins / treeWASLinks
treeWAS: A Phylogenetic Tree-Based Tool for Genome-Wide Association Studies in Microbes
☆105Updated 9 months ago
Alternatives and similar repositories for treeWAS
Users that are interested in treeWAS are comparing it to the libraries listed below
Sorting:
- SAMSA pipeline, version 2.0. An open-source metatranscriptomics pipeline for analyzing microbiome data, built around DIAMOND and customi…☆59Updated last year
- GET_HOMOLOGUES: a versatile software package for pan-genome analysis☆121Updated 2 weeks ago
- Program for estimating πN/πS, dN/dS, and other diversity measures from next-generation sequencing data☆117Updated 2 years ago
- Bash pipeline for analysis of ONT full-length 16S sequences in QIIME2☆29Updated 5 years ago
- Massively parallel phylogenetic placement of genetic sequences☆86Updated 3 years ago
- Bayesian inference of ancestral dates on bacterial phylogenetic trees☆92Updated 3 months ago
- Making whole bacterial genome sequencing data analysis easy☆113Updated 6 months ago
- r package for post-clustering curation of amplicon next generation sequencing data (metabarcoding)☆71Updated last year
- ClonalFrameML: Efficient Inference of Recombination in Whole Bacterial Genomes☆116Updated last year
- Create BIOM-format tables (http://biom-format.org) from Kraken output (http://ccb.jhu.edu/software/kraken/, https://github.com/DerrickWoo…☆56Updated 3 years ago
- An efficient and objective tool for optimizing microbiome rRNA gene trimming parameters☆91Updated last year
- Nextflow pipeline to analyze PacBio HiFi full-length 16S data☆87Updated 4 months ago
- ☆84Updated 2 years ago
- All of my various bioinformatic scripts fit for public consumption (loosely defining "fit")☆79Updated 2 years ago
- A toolbox for comparative genomics.☆106Updated 4 years ago
- Snakemake workflow for metagenomic classification with Kraken2☆66Updated 2 years ago
- Automatically exported from code.google.com/p/jmodeltest2☆82Updated 4 years ago
- Using ggtree to build phylogenetic trees☆50Updated last year
- Pairwise SNP distance matrix from a FASTA sequence alignment☆143Updated last year
- Scripts and tutorials on how to assemble individual microbial genomes from metagenomes☆80Updated 9 years ago
- Collection of scripts for bacterial genomics☆49Updated 5 years ago
- IS mapping software☆57Updated 3 years ago
- DDBJ Fast Annotation and Submission Tool☆83Updated 2 months ago
- SHallow shOtGUN profiler☆53Updated 3 years ago
- Sydney Phylogenetics Workshop☆67Updated 4 months ago
- Best-fit model selection☆85Updated last year
- ☆72Updated 3 weeks ago
- Bioinformatics Tools☆89Updated last month
- Phylogenetic and taxonomic analysis for genomes and metagenomes☆82Updated 9 years ago
- Concatenates FASTA formatted files to one "phyml" (PHYLIP) formatted file☆73Updated last year