☆18Mar 20, 2026Updated this week
Alternatives and similar repositories for easy-genomics
Users that are interested in easy-genomics are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Assembly of Nanopore Sequencing☆17Jan 8, 2026Updated 2 months ago
- Spriggan is a pipeline used for assembly of bacterial whole genome sequence data and identification of antibiotic resistance genes.☆16Updated this week
- Opinionated viral metagenomics workflow☆12Mar 18, 2026Updated last week
- Organism-specific interpretation of AMR genotypes☆15Mar 17, 2026Updated last week
- StxTyper uses a standardized algorithm to accurately type both known and unknown Shiga toxin operons from assembled genomic sequence.☆16Dec 9, 2025Updated 3 months ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Predict MLST directly from uncorrected long reads☆27Oct 31, 2025Updated 4 months ago
- A tool easily taken advantage of for in silico serogrouping of Pseudomonas aeruginosa isolates☆14Aug 26, 2024Updated last year
- A Nextflow pipeline for viral genomics (Influenza/RSV) supporting Illumina and Nanopore sequencing of clinical and wastewater samples.☆10Feb 27, 2026Updated 3 weeks ago
- Viral (meta)-genome assembly pipeline.☆23Mar 6, 2026Updated 2 weeks ago
- Nanopore read de-multiplexer☆13Mar 25, 2020Updated 6 years ago
- Interpretative standards for AMR genotypes☆29Updated this week
- Better and faster Rust implementation of the FragGeneScan gene prediction model for short and error-prone reads.☆31Feb 3, 2026Updated last month
- SARs-CoV-2 Primer schemes☆16May 14, 2025Updated 10 months ago
- Mapping NCBI Genbank accession to GTDB accession☆14Feb 13, 2021Updated 5 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- BBTools: Official suite of fast, multithreaded bioinformatics tools for DNA/RNA analysis. BBMap aligner, BBDuk trimmer, BBMerge, and 90+ …☆66Updated this week
- A methodology to rapidly leverage whole genome sequencing of bacterial isolates for clinical identification.☆35Dec 2, 2024Updated last year
- Python Toolkit for using containerized programs in either Singularity or Docker☆29Mar 19, 2024Updated 2 years ago
- NCBI Pathogen Detection Portal toolkit☆11Sep 6, 2023Updated 2 years ago
- Classic hello world script in Nextflow language☆23Feb 6, 2026Updated last month
- Cookiecutter profile for making a NextFlow-based bioinformatics tool☆17Jul 8, 2024Updated last year
- interactive barplot for amplicon sequencing☆13Dec 5, 2024Updated last year
- Luslab nextflow modules☆14Apr 30, 2021Updated 4 years ago
- Real-time species-typing visualisation for nanopore data.☆13Apr 11, 2023Updated 2 years ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- A (very) fast program for getting statistics about a fastq file, the way I need them, written in Rust☆32Updated this week
- A repo with just adapter sequences☆15Jul 7, 2025Updated 8 months ago
- Dryad is a Nextflow pipeline for examining prokaryote relatedness. Dryad can perform a reference free analysis and/or SNP analysis.☆18Mar 18, 2026Updated last week
- 🧬 💻 TOSTADAS → Toolkit for Open Sequence Triage, Annotation and DAtabase Submission☆29Mar 10, 2026Updated 2 weeks ago
- Analyze a set of genomes with the anvi'o pangenome pipeline☆16Oct 11, 2023Updated 2 years ago
- The MLST pipeline developed by the PathOGiST research group☆36Nov 29, 2023Updated 2 years ago
- Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale product…☆12Sep 9, 2025Updated 6 months ago
- 🤖 A simple, modular, Discord bot ✨☆11Apr 19, 2023Updated 2 years ago
- MycoSNP: Whole Genome Sequencing Analysis of Fungal Isolates☆91Mar 10, 2026Updated 2 weeks ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Valk Guard scans raw SQL plus application code and catches risky queries before they merge. It parses real source code, synthesizes SQL…☆31Updated this week
- Script for parsing SAM/BAM files for coverage statistics☆16Jun 13, 2023Updated 2 years ago
- Report salient qPCR primer/probe or immune epitope mismatches info against a set of pathogen isolate genomes☆16Mar 11, 2025Updated last year
- The Whole Genome Sequencing Coverage Plot (wgscovplot) is a tool to generate HTML Interactive Coverage Plot given coverage depth informat…☆19May 3, 2024Updated last year
- emm Automatic Isolate Labeller☆12Mar 25, 2025Updated last year
- A tool in order to accurately remove primer sequences from NGS reads in an amplicon experiment☆20Nov 12, 2025Updated 4 months ago
- MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies☆172Apr 16, 2025Updated 11 months ago