Indexes genomes using SNVs, MLST, or kmers for rapid querying, clustering, and visualization.
☆12Feb 2, 2023Updated 3 years ago
Alternatives and similar repositories for genomics-data-index
Users that are interested in genomics-data-index are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A Nextflow wrapped workflow for generating the mutation profiles of SARS-CoV-2 or Mpox genomes. Workflow is developed in collaboration wi…☆11Sep 18, 2026Updated last month
- A simple pipeline for bacterial assembly and quality control☆17Oct 22, 2026Updated last week
- ☆45Feb 13, 2026Updated 8 months ago
- Experiments with using BIGSI data structure for metagenomic and QC applications☆19Aug 12, 2024Updated 2 years ago
- Cython API for the Mutation Annotated Tree (MAT) Online Phylogenetics Toolkit☆14May 28, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Report salient qPCR primer/probe or immune epitope mismatches info against a set of pathogen isolate genomes☆16Mar 11, 2025Updated last year
- 🍗⭐ In silico Legionella pneumophila Sequence Based Typing☆13Feb 8, 2026Updated 8 months ago
- IRIDA Next☆15Updated this week
- 🐪Classification through yAML Heuristic Mapping Protocol 🐪☆10Jun 16, 2026Updated 4 months ago
- Files and methodology pertaining to the sequencing and analysis of SARS-CoV-2, causative agent of COVID-19.☆33Apr 10, 2026Updated 6 months ago
- Summarise nucleotide counts at a set of positions in a BAM file to search for mixtures☆13Apr 5, 2022Updated 4 years ago
- Databases for wg/cgMLST analysis with the PN2.0 software☆10May 7, 2026Updated 5 months ago
- serious constellations of reoccurring phylogenetically-independent origin☆39Feb 13, 2026Updated 8 months ago
- Pytorch Implementation of the Explainable Conditional Adversarial Autoencoder using Saliency Maps and SHAP (J. of Imaging - MDPI)☆11Mar 5, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Reproducible workflow for SARS-CoV-2 recombinant sequence detection.☆18May 15, 2023Updated 3 years ago
- A Python package to update the MLST database for the mlst tool.☆33Jul 22, 2026Updated 3 months ago
- Tool for exploring sequence alignment algorithms☆14Aug 30, 2024Updated 2 years ago
- Bluetooth Internet Adapter is an idea for a solution allowing Personal Computers to access Internet content via Bluetooth connection to a…☆15Apr 12, 2010Updated 16 years ago
- ☆17May 23, 2026Updated 5 months ago
- Pipeline to generate NGS reads from a phylogeny☆40Sep 13, 2022Updated 4 years ago
- REcombination BARcode detector.☆17Apr 2, 2024Updated 2 years ago
- Data and code used to generate figures to describe SARS-CoV-2 VOI lineage B.1.620 in Europe/Lithuania.☆11Sep 8, 2021Updated 5 years ago
- Cancer Skin Classification (HAM10000) using Vision Transformer (ViT)☆12Apr 29, 2023Updated 3 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Utility to alias and dealias pango lineages☆23Dec 18, 2023Updated 2 years ago
- Neural Machine Translation using LSTMs and Attention mechanism. Two approaches were implemented, models, one without out attention using …☆13Jun 21, 2022Updated 4 years ago
- Neptune: Genomic Signature Discovery☆22May 1, 2026Updated 6 months ago
- ☆18Jul 27, 2023Updated 3 years ago
- In this project, I used a deep neural network (built with Keras) to clone car driving behavior. The dataset used to train the network is …☆14Aug 6, 2018Updated 8 years ago
- A JBrowse plugin for viewing GWAS data☆13Feb 13, 2022Updated 4 years ago
- Efficient and comprehensive metadata acquisition from the NCBI databases (includes SRA).☆56May 25, 2022Updated 4 years ago
- interactive Multi Objective K-mer Analysis☆25Mar 5, 2023Updated 3 years ago
- Ultrafast sequence typing and gene detection from NGS raw reads☆20Apr 15, 2021Updated 5 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- LYVE-SET, a method of using hqSNPs to create a phylogeny, especially for outbreak investigations☆26Aug 26, 2024Updated 2 years ago
- Dryad is a Nextflow pipeline for examining prokaryote relatedness. Dryad can perform a reference free analysis and/or SNP analysis.☆21Updated this week
- whole genome MLST analysis☆57Jun 17, 2026Updated 4 months ago
- RAPT Pill - Info / Teardown☆12Aug 20, 2026Updated 2 months ago
- ☆16Oct 29, 2025Updated last year
- OpenCV Alpine☆12Jul 24, 2017Updated 9 years ago
- Strip reads from Oxford Nanopore FAST5 files if they meet certain criteria☆14Jul 29, 2021Updated 5 years ago