mcollatz / EpiDopeLinks
Prediction of B-cell epitopes from amino acid sequences using deep neural networks.
☆15Updated 4 years ago
Alternatives and similar repositories for EpiDope
Users that are interested in EpiDope are comparing it to the libraries listed below
Sorting:
- Prediction of B-cell epitopes from amino acid sequences using deep neural networks.☆17Updated 3 years ago
- ☆18Updated last year
- Source code for the BUDE Alanine Scan web application.☆12Updated 4 months ago
- Frankies Scalable, AI-Based Antibody Design Pipeline☆16Updated last month
- Code, intermediate results and an interactive visualisation on prediction of putative novel enzymes and small molecule binding proteins p…☆27Updated 2 years ago
- Peptide library design☆23Updated 5 years ago
- Geometry-aware protein binding site predictor☆24Updated last year
- ☆25Updated last year
- Python package and command line tool for epitope prediction☆52Updated last year
- ☆23Updated 2 years ago
- A sequence-based pan model for peptide-MHC II binding affinity prediction.☆21Updated 3 years ago
- ☆17Updated 2 years ago
- Evolutionary conservation estimation of residues or nucleotides☆48Updated 3 years ago
- Antibody-Specific Epitope Mapping☆14Updated last month
- Embedding-based annotation transfer (EAT) uses Euclidean distance between vector representations (embeddings) of proteins to transfer ann…☆37Updated last month
- Python wrapper to design RNA molecules using RNAblueprint, RNARedPrint and for energy evaluations ViennaRNA, Hotknots, pKiss and Nupack.☆21Updated 7 years ago
- Fast protein domain structure embedding+search tool☆25Updated 2 weeks ago
- deep protein solubility prediction☆39Updated 6 years ago
- Predicting mechanism of action of novelcompounds using compound structure andtranscriptomic signature co-embedding☆14Updated last year
- ☆21Updated last week
- Code repository for the SPOC tool for scoring binary AF-M predicitons.☆13Updated 5 months ago
- a collection of colabs useful for molecular biology☆31Updated last year
- Long disorder consensus predictor☆17Updated last month
- A fast, alignment-free method for estimating sequence conservation using protein sequence embedding☆17Updated 2 years ago
- Convert PDB residues to their Uniprot equivalents☆17Updated 5 years ago
- KDS software for Kinase Drug Selectivity☆11Updated 2 years ago
- Scripts for "Determining protein structures using deep mutagenesis", Schmiedel & Lehner, Nature Genetics, 2019☆17Updated 6 years ago
- Python implementation of the FR3D software for searching and annotating RNA 3D structures☆20Updated last week
- Next generation sequence parameter library for proteins☆35Updated 3 weeks ago
- Supporting repository for "Protein language models trained on multiple sequence alignments learn phylogenetic relationships" (https://www…☆17Updated 8 months ago