Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments
☆12Sep 9, 2025Updated 10 months ago
Alternatives and similar repositories for cromwell
Users that are interested in cromwell are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Client for the Cromwell workflow engine☆17Mar 7, 2024Updated 2 years ago
- Nanopore read de-multiplexer☆13Mar 25, 2020Updated 6 years ago
- VGEA (Viral Genomes Easily Analyzed) is a pipeline for analysis of RNA virus next-generation sequencing data.☆20Sep 12, 2021Updated 4 years ago
- Luslab nextflow modules☆14Apr 30, 2021Updated 5 years ago
- Mapping NCBI Genbank accession to GTDB accession☆14Feb 13, 2021Updated 5 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Linter rules for Nextflow DSL scripts☆34May 25, 2026Updated 2 months ago
- Genomics Workflows on AWS☆148Jul 31, 2023Updated 2 years ago
- Real-time species-typing visualisation for nanopore data.☆12Apr 11, 2023Updated 3 years ago
- Analyze a set of genomes with the anvi'o pangenome pipeline☆16Oct 11, 2023Updated 2 years ago
- ☆92Updated this week
- Framework for testing CWL tools and workflows☆20Updated this week
- This solution provides a framework for Next Generation Sequencing (NGS) genomics secondary-analysis pipelines using AWS Step Functions an…☆39Jan 11, 2024Updated 2 years ago
- Workflow for SARS-CoV-2 genome Assembly at FioCruz/IAM☆28Feb 6, 2024Updated 2 years ago
- Workflow for viral analysis guided by reference☆17Jun 9, 2026Updated last month
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆10Mar 25, 2025Updated last year
- omniCLIP is a CLIP-Seq peak caller☆16Nov 14, 2020Updated 5 years ago
- An open-source pathogen sequence database dedicated to equitable sharing, transparent governance, & empowering global public health.☆57Updated this week
- Script for parsing SAM/BAM files for coverage statistics☆16Jun 13, 2023Updated 3 years ago
- ☆148May 6, 2024Updated 2 years ago
- Report salient qPCR primer/probe or immune epitope mismatches info against a set of pathogen isolate genomes☆16Mar 11, 2025Updated last year
- ☆22May 8, 2023Updated 3 years ago
- UniCell Deconvolve Paper☆10Apr 25, 2023Updated 3 years ago
- A tool in order to accurately remove primer sequences from NGS reads in an amplicon experiment☆20Nov 12, 2025Updated 8 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Foundations for the Rust omics ecosystem.☆20Updated this week
- handy dialogs in/for svelte☆18Sep 11, 2023Updated 2 years ago
- Fun little project to help me beat my Mom at Words with Friends.☆13Apr 26, 2020Updated 6 years ago
- Spaghetti: in situ analysis of 16S rRNA amplicons obtained by nanopore sequencing☆20Jul 26, 2024Updated 2 years ago
- BACTpipe: An assembly and annotation pipeline for bacterial genomics☆20Dec 3, 2024Updated last year
- https://Invertimo.com☆26Jun 6, 2022Updated 4 years ago
- Super small biological datasets for unit testing☆23Apr 22, 2024Updated 2 years ago
- ☆18Updated this week
- ☆10Apr 22, 2024Updated 2 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Twenty Years of R (Presentation)☆14Jan 5, 2021Updated 5 years ago
- Ultrafast sequence typing and gene detection from NGS raw reads☆20Apr 15, 2021Updated 5 years ago
- SaffronTree: Reference free rapid phylogenetic tree construction from raw read data☆25Jun 11, 2020Updated 6 years ago
- Maximum Likelihood Amplicon Pipeline☆22Jul 16, 2026Updated last week
- Lemur is a tool for rapid and accurate taxonomic profiling on long-read metagenomic datasets☆25Apr 30, 2026Updated 2 months ago
- A computation framework designed to detect differential junctions usage between two groups at single cell level☆13Feb 1, 2021Updated 5 years ago
- A quick, all in one stop for someone to get a blog presence up and running.☆10Jul 9, 2022Updated 4 years ago