Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments
☆12Sep 9, 2025Updated last year
Alternatives and similar repositories for cromwell
Users that are interested in cromwell are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Data and code used to generate figures to describe SARS-CoV-2 VOI lineage B.1.620 in Europe/Lithuania.☆11Sep 8, 2021Updated 5 years ago
- Client for the Cromwell workflow engine☆17Mar 7, 2024Updated 2 years ago
- ☆12Updated this week
- Luslab nextflow modules☆14Apr 30, 2021Updated 5 years ago
- VGEA (Viral Genomes Easily Analyzed) is a pipeline for analysis of RNA virus next-generation sequencing data.☆19Sep 12, 2021Updated 5 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Nanopore read de-multiplexer☆13Mar 25, 2020Updated 6 years ago
- Linter rules for Nextflow DSL scripts☆35May 25, 2026Updated 5 months ago
- Mapping NCBI Genbank accession to GTDB accession☆14Feb 13, 2021Updated 5 years ago
- Real-time species-typing visualisation for nanopore data.☆12Apr 11, 2023Updated 3 years ago
- Analyze a set of genomes with the anvi'o pangenome pipeline☆16Oct 11, 2023Updated 3 years ago
- nf-core pipeline for data submission to ENA☆22Updated this week
- Framework for testing CWL tools and workflows☆20Updated this week
- ☆43Updated this week
- OxyMetaG: Oxygen metabolism profiling from metagenomic data☆14Aug 8, 2026Updated 2 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- One pure-Rust binary that finds genes in phages, viruses, giant viruses, crassphages, bacteria, archaea, eukaryotes — and raw sequencing …☆36Oct 14, 2026Updated 2 weeks ago
- Ancient Metagenome Assembler For Heavily Damaged Datasets☆12Oct 27, 2025Updated last year
- omniCLIP is a CLIP-Seq peak caller☆16Nov 14, 2020Updated 5 years ago
- Workflow for SARS-CoV-2 genome Assembly at FioCruz/IAM☆28Feb 6, 2024Updated 2 years ago
- ☆96Jul 23, 2026Updated 3 months ago
- Script for parsing SAM/BAM files for coverage statistics☆16Jun 13, 2023Updated 3 years ago
- ☆10Sep 17, 2026Updated last month
- UniCell Deconvolve Paper☆10Apr 25, 2023Updated 3 years ago
- Workflow for viral analysis guided by reference☆16Oct 9, 2026Updated 3 weeks ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- An open-source pathogen sequence database dedicated to equitable sharing, transparent governance, & empowering global public health.☆59Updated this week
- Bacterial typing pipeline for clinical NGS data. Written in NextFlow, Python & Bash.☆17Updated this week
- R implementation of integration metrics for single-cell data☆14Sep 23, 2026Updated last month
- Fun little project to help me beat my Mom at Words with Friends.☆13Apr 26, 2020Updated 6 years ago
- A tool in order to accurately remove primer sequences from NGS reads in an amplicon experiment☆20Nov 12, 2025Updated 11 months ago
- ☆16May 21, 2026Updated 5 months ago
- Python library for generating beautiful, retro ASCII flowcharts from simple text input.☆15Jan 18, 2026Updated 9 months ago
- Report salient qPCR primer/probe or immune epitope mismatches info against a set of pathogen isolate genomes☆16Mar 11, 2025Updated last year
- ☆10Apr 22, 2024Updated 2 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Twenty Years of R (Presentation)☆14Jan 5, 2021Updated 5 years ago
- EcoliTyper: A species-optimized computational pipeline for comprehensive genotyping and surveillance of Escherichia coli. Perfect for cli…☆29Updated this week
- ☆19Updated this week
- Super small biological datasets for unit testing☆23Apr 22, 2024Updated 2 years ago
- BACTpipe: An assembly and annotation pipeline for bacterial genomics☆21Aug 13, 2026Updated 2 months ago
- Spaghetti: in situ analysis of 16S rRNA amplicons obtained by nanopore sequencing☆20Jul 26, 2024Updated 2 years ago
- Scalable graph-regularized dimension reduction for million-cell and multi-section spatial transcriptomics via GraphPCA-Turbo☆13Aug 13, 2026Updated 2 months ago