artic-network / civetLinks
Cluster Investigation & Virus Epidemiology Tool
☆50Updated 3 months ago
Alternatives and similar repositories for civet
Users that are interested in civet are comparing it to the libraries listed below
Sorting:
- Reconstruction of transmission trees using genomic data☆63Updated last year
- Simka and SimkaMin are comparative metagenomics methods dedicated to NGS datasets.☆48Updated 3 years ago
- Phylogenetics between and within hosts at once, all along the genome.☆50Updated 11 months ago
- A set of scripts for calculating pairwise SNP distance☆42Updated 2 years ago
- ☆74Updated last year
- Repository for storing latest model, protobuf, designation hash and alias files for pangolin assignments☆31Updated last week
- 🧬 💻 TOSTADAS → Toolkit for Open Sequence Triage, Annotation and DAtabase Submission☆28Updated last week
- Rapid analysis and visualization of coronavirus genome variation☆48Updated last month
- a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome☆49Updated 2 years ago
- SHallow shOtGUN profiler☆53Updated 3 years ago
- Bioinformatics Pipeline and Visualization resources☆57Updated last year
- An `R` package for various phylogenetic and evolutionary biology data manipulations☆12Updated 7 years ago
- Metagenomic Analysis in Real Time☆28Updated this week
- rhierbaps: R implementation of hierBAPS☆35Updated 4 years ago
- Tools for making blobplots or Taxon-Annotated-GC-Coverage plots (TAGC plots) to visualise the contents of genome assembly data sets as a …☆47Updated 3 years ago
- Bayesian inference of ancestral dates on bacterial phylogenetic trees☆91Updated last month
- A fast approximation to a Dirichlet Process Mixture model (DPM) for clustering genetic data☆66Updated 3 years ago
- Automated Pipeline to Generate FTP Files and Manage Submission of Sequence Data to Public Repositories☆38Updated 3 weeks ago
- de novo virus assembler of Illumina paired reads☆56Updated 4 years ago
- Pipeline to generate NGS reads from a phylogeny☆39Updated 3 years ago
- Benchmark datasets for WGS analysis of SARS-CoV-2. (https://peerj.com/articles/13821/)☆56Updated 2 years ago
- INSaFLU-TELEVIR: an free web-based (but also locally installable) bioinformatics suite for virus metagenomic detection and routine genomi…☆37Updated 2 weeks ago
- Small collection of tools for performing quality control on coronavirus sequencing data and genomes☆48Updated last year
- GrapeTree is a fully interactive, tree visualization program, which supports facile manipulations of both tree layout and metadata. Click…☆83Updated 9 months ago
- Scalable relaxed clock phylogenetic dating☆25Updated 2 weeks ago
- Automated pipeline for analyses of fungal ITS from the Illumina☆31Updated 4 months ago
- VIRULIGN: fast codon-correct alignment and annotation of viral genomes☆35Updated 4 years ago
- map Illumina metagenomes to genomes!☆38Updated last week
- ☆36Updated 5 months ago
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 6 years ago