artic-network / civetLinks
Cluster Investigation & Virus Epidemiology Tool
☆50Updated last week
Alternatives and similar repositories for civet
Users that are interested in civet are comparing it to the libraries listed below
Sorting:
- Reconstruction of transmission trees using genomic data☆63Updated last year
- Repository for storing latest model, protobuf, designation hash and alias files for pangolin assignments☆31Updated last week
- a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome☆49Updated 2 years ago
- ☆36Updated 2 months ago
- Phylogenetics between and within hosts at once, all along the genome.☆48Updated 8 months ago
- Bayesian inference of ancestral dates on bacterial phylogenetic trees☆88Updated last month
- R package for studying environmental rasters and phylogenetic informed movements (Dellicour et al. 2016, Bioinformatics; Dellicour et al.…☆35Updated 2 months ago
- ☆16Updated 2 months ago
- Bioinformatics Pipeline and Visualization resources☆56Updated 9 months ago
- Spatial Phylogenetic Reconstruction of Evolutionary Dynamics 3☆16Updated 2 years ago
- A set of scripts for calculating pairwise SNP distance☆41Updated 2 years ago
- Primer schemes for real-time genome epidemiology☆29Updated 2 years ago
- ASMNGS20 - 2020 Conference Details☆15Updated 3 years ago
- Estimating time trees from very large phylogenies☆26Updated 11 months ago
- Metagenomic Analysis in Real Time☆24Updated this week
- TaxTriage is a Nextflow workflow designed to agnostically identify and classify microbial organisms within short- or long-read metagenomi…☆37Updated last week
- Consensus sequences for U.S. H5N1 clade 2.3.4.4b☆32Updated this week
- A fast approximation to a Dirichlet Process Mixture model (DPM) for clustering genetic data☆62Updated 2 years ago
- Rapid analysis and visualization of coronavirus genome variation☆48Updated 3 weeks ago
- Fast, scalable, accurate and accessible Bayesian phylogenetics☆39Updated last month
- Influenza data pipeline to automate genotyping assignment☆34Updated 3 weeks ago
- Automated Pipeline to Generate FTP Files and Manage Submission of Sequence Data to Public Repositories☆38Updated 2 months ago
- Scalable relaxed clock phylogenetic dating☆25Updated last year
- 🧬 💻 TOSTADAS → Toolkit for Open Sequence Triage, Annotation and DAtabase Submission☆27Updated last week
- ☆20Updated 2 months ago
- Prepares a SARS-CoV-2 submission for GISAID, NCBI or ENA. Can read GISAID or NCBI files, or plain fasta+tsv/csv/xls. Finds files in input…☆36Updated 3 years ago
- ☆17Updated last week
- Utility to alias and dealias pango lineages☆22Updated last year
- Global phylogenies of SARS-CoV-2 sequences☆86Updated last year
- 🐻⇔🐨 Calculate distance matrix from ChewBBACA cgMLST allele call tables☆27Updated last year