Repository containing the scripts regarding analyses in Zufferey & Tavernari et al.
☆10Feb 22, 2021Updated 5 years ago
Alternatives and similar repositories for TAD-benchmarking-scripts
Users that are interested in TAD-benchmarking-scripts are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Hi-C Interaction Frequency Inference (HIFI): High-resolution estimation of DNA-DNA interaction frequency from Hi-C data☆24Sep 28, 2022Updated 4 years ago
- A legacy repository. Was replaced by distiller, cooler, and cooltools.☆21Mar 4, 2020Updated 6 years ago
- TAD Calling using spectral clustering in R☆13Aug 21, 2026Updated 2 months ago
- FreeHi-C pipeline for high fidelity Hi-C data simulation.☆12Jul 13, 2021Updated 5 years ago
- Multiscale representation of genomic signals☆13Jan 31, 2017Updated 9 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Normalizing Hi-C contact counts efficiently☆41May 21, 2025Updated last year
- Deep learning models to predict enhancers in different Drosophila embryo tissues☆21Dec 10, 2023Updated 2 years ago
- ☆15Jul 11, 2023Updated 3 years ago
- Code for reproducing the results of the preprint Maximally Predictive Ensemble Dynamics from Data (2021)☆16Sep 25, 2025Updated last year
- Genome-wide contact analysis using sklearn☆79Mar 23, 2024Updated 2 years ago
- A set of pipelines for Hi-C and ChIP-Seq analysis.☆48Apr 11, 2024Updated 2 years ago
- Modeling Latent Flow Structure using Hodge Decomposition☆17Mar 13, 2025Updated last year
- A GAN-based method for Enhancing Hi-C data☆33Dec 17, 2020Updated 5 years ago
- A fast and efficient tool for converting chromatin interaction data between genome assemblies☆78Jul 22, 2025Updated last year
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- HiC-Reg is a tool to predict Hi-C contact counts from one-dimensional regulatory signals☆11Aug 25, 2020Updated 6 years ago
- ☆23Jul 27, 2023Updated 3 years ago
- 4C-seq processing pipeline☆28Mar 17, 2025Updated last year
- Python NGS Repository☆10Apr 22, 2026Updated 6 months ago
- ☆27Oct 22, 2026Updated last week
- A self-contained repository of all code needed for SPRITE analysis☆22Jul 28, 2021Updated 5 years ago
- ☆12Nov 9, 2020Updated 5 years ago
- ☆10Apr 24, 2024Updated 2 years ago
- ☆36Feb 22, 2023Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- scripts used for processing and analyzing data in the article.☆13Oct 31, 2019Updated 6 years ago
- A pipeline for processing single cell RNA-seq data generated with the SmartSeq2 protocol.☆17Apr 26, 2021Updated 5 years ago
- Enhanced Chromatin Occupancy (EChO)☆13Jan 8, 2020Updated 6 years ago
- ☆29Apr 23, 2025Updated last year
- Polyploid allele identification☆12Jul 8, 2025Updated last year
- Machine Learning with Digital Signal Processing☆22Jan 21, 2019Updated 7 years ago
- Particle dynamics and simulated annealing for chromosome structure calculation☆19Jan 17, 2018Updated 8 years ago
- ☆21Aug 20, 2024Updated 2 years ago
- Fit-Hi-C is a tool for assigning statistical confidence estimates to chromosomal contact maps produced by genome-wide genome architecture…☆96Aug 29, 2022Updated 4 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A cool place to store your Hi-C☆247Updated this week
- a python api for higlass☆10Mar 15, 2023Updated 3 years ago
- Experiments with noisy labels, to se the accuracy of classification under noise, effects of active learning, etc☆13Oct 1, 2017Updated 9 years ago
- ☆12Feb 23, 2022Updated 4 years ago
- ☆13Aug 30, 2025Updated last year
- multi_tbx: a simple tool for indexing VCF files and extract variant records for variant data stored in multiple VCF files.☆10Jan 7, 2022Updated 4 years ago
- Heuristic search algorithm for fitting qpGraph models☆11Aug 4, 2022Updated 4 years ago