ucsffrancislab / REdiscoverTELinks
☆12Updated last year
Alternatives and similar repositories for REdiscoverTE
Users that are interested in REdiscoverTE are comparing it to the libraries listed below
Sorting:
- Enhanced and elegant flexible peak/loop/domain -calling and analysis tool for 1D/3D genomic data.☆52Updated 5 months ago
- Docker for 4DN Hi-C processing pipeline☆60Updated last year
- single-cell-Isoform-Sequencing-Analysis-Tools: New and powerful tools brings single-cell RNA sequencing to the Isoform level and single m…☆26Updated last year
- ☆32Updated last year
- ATAC-seq processing pipeline☆34Updated 3 years ago
- A Deep Learning-Based Model for Quantifying Transposable Elements in Single-Cell Sequencing Data☆32Updated 3 weeks ago
- Estimate locus specific human LINE-1 expression.☆39Updated 3 weeks ago
- Tutorial Website☆60Updated 4 years ago
- perl cworld module and collection of utility/analysis scripts for C data (3C, 4C, 5C, Hi-C)☆67Updated 6 years ago
- Tool comparison for detecting differentially expressed individual transposable elements☆11Updated 3 years ago
- An Optimized Nested TAD caller for Hi-C data☆25Updated 4 years ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆41Updated 3 years ago
- Dynamics analysis of Alternative PolyAdenylation from RNA-seq☆63Updated 2 years ago
- Uncertainty-aware quantification of Transposable Elements expression in scRNA-seq☆20Updated last month
- Statistically Significant loops from HiChIP data☆46Updated last year
- CLIP-seq Analysis of Multi-mapped reads☆31Updated 4 years ago
- Full-length transcriptome splicing and mutation analysis☆84Updated last year
- ☆25Updated 4 years ago
- ☆52Updated last year
- Links to ATAC-seq analysis tools☆73Updated 4 years ago
- Tools to analyze Dip-C (or other 3C/Hi-C) data☆72Updated last year
- RNA editing tests☆17Updated 5 years ago
- ROSE: RANK ORDERING OF SUPER-ENHANCERS☆57Updated 3 weeks ago
- An R package to time somatic mutations☆65Updated 4 years ago
- A modular, containerized pipeline for ATAC-seq data processing☆61Updated 2 months ago
- scripts for analyzing the CVDC data.☆20Updated 6 years ago
- CALDER is a Hi-C analysis tool that allows: (1) compute chromatin domains from whole chromosome contacts; (2) derive their non-linear hie…☆24Updated 7 months ago
- code associated with crane-nature-2015, 10.1038/nature14450☆36Updated 10 years ago
- This is a package and a shell script for alternative polyadenylation (APA) analysis of 3' tag single-cell RNA-seq data.☆24Updated 4 years ago
- Software to compute reproducibility and quality scores for Hi-C data☆49Updated 6 years ago