yezhengSTAT / ADTnorm
ADTnorm normalizes the cell surface protein measurement of CITE-seq data, facilitating across batches and across studies data integration.
☆22Updated last month
Alternatives and similar repositories for ADTnorm:
Users that are interested in ADTnorm are comparing it to the libraries listed below
- R package for analysing single cell data☆52Updated 2 years ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆69Updated 9 months ago
- Normalize CITEseq Data☆65Updated 8 months ago
- Analysis methods for analysing single cell RNA-seq data; particularly with the goal of checking if tentative clusters of cells are signif…☆35Updated last year
- Single-cell analysis with non-negative matrix factorization☆44Updated 3 months ago
- Coarse-graining of large single-cell RNA-seq data into metacells☆72Updated 5 months ago
- R package for decontaminating the spot swapping effect and recovering true expression in spatial transcriptomics data☆27Updated 8 months ago
- Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles☆30Updated last year
- Gene Set + S2G strategy annotations analyzed for disease architecture☆50Updated 2 years ago
- R package to detect breakpoints and assign somies to scATAC-seq data☆33Updated last month
- Cell type pipes for R☆51Updated last year
- Detection of allele-specific subclonal copy number alterations from single-cell transcriptomic data.☆36Updated 4 months ago
- ☆38Updated 4 years ago
- R package for analysing meaningful differences in the numbers of cell populations from single-cell phenotypic data☆21Updated 6 months ago
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆50Updated last year
- SIB/Scilifelab autumn school in single cell omics 2019.☆22Updated 5 years ago
- ☆35Updated 11 months ago
- R package for specialised analysis of single cell data☆36Updated 2 years ago
- An R package performing object conversion from ArchRProject (ArchR) to Signac SeuratObject (Signac)☆33Updated 5 months ago
- ☆29Updated last year
- Tidy R query API for the harmonised and curated CELLxGENE single-cell atlas.☆90Updated last month
- Pan-Cancer Single Cell Classifier☆64Updated 8 months ago
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆46Updated 3 years ago
- ☆29Updated 3 weeks ago
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆35Updated 3 years ago
- scWGCNA☆56Updated 2 years ago
- A repository for benchmarking spatial deconvolution and mapping tools☆29Updated 3 weeks ago
- R/Bioconductor package for working with 10x scATACseq data☆38Updated last year
- Mosaic single cell data integration using non-overlapping features☆36Updated 2 years ago
- ☆16Updated 7 months ago