ADTnorm normalizes the cell surface protein measurement of CITE-seq data, facilitating across batches and across studies data integration.
☆32Jul 8, 2025Updated last year
Alternatives and similar repositories for ADTnorm
Users that are interested in ADTnorm are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- MultiModal Classifier Hierarchy (MMoCHi)☆13Oct 2, 2025Updated last year
- Inferring gene co-expression networks from single cell gene expression data☆29Aug 5, 2022Updated 4 years ago
- CITEViz: Replicating the Interactive Flow Cytometry Workflow in CITE-Seq☆11Jun 6, 2024Updated 2 years ago
- An R package to analyze single-cell V(D)J data☆30Nov 13, 2023Updated 2 years ago
- Short course using RStudio for biological data analysis☆14Jul 7, 2022Updated 4 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Container class to represent genomic locations and support genomic analysis☆28Updated this week
- Perform differential expression analysis on cohort-scale single cell datasets using linear mixed models☆25Sep 23, 2026Updated last month
- Single Cell RNA PolyA Site Discovery☆11Updated this week
- Single-cell Hi-C & RNA analysis☆11Nov 20, 2024Updated last year
- Learn single-cell dynamics using neural differential equations☆72Aug 18, 2026Updated 2 months ago
- Reproducibility of results/figures from scvi-hub paper☆15Apr 16, 2025Updated last year
- ☆17Jul 29, 2021Updated 5 years ago
- Multi-resolution Variational Inference☆10Oct 9, 2024Updated 2 years ago
- An R package designed to demultiplex cell hashing data☆32Oct 10, 2026Updated 2 weeks ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Normalize CITEseq Data☆73Nov 9, 2025Updated 11 months ago
- Count ratio uncertainty modeling base linear regression☆16Sep 23, 2026Updated last month
- TRAjectory-based Differential Expression analysis for SEQuencing data☆319Jun 17, 2025Updated last year
- R implementation of integration metrics for single-cell data☆14Sep 23, 2026Updated last month
- Comprehensive pipeline for donor demultiplexing in single cell☆26Oct 22, 2026Updated last week
- Single-cell multi-omics integration using Optimal Transport☆56Aug 14, 2025Updated last year
- WES HLA Typing based on multiple alternative tools☆18Mar 8, 2021Updated 5 years ago
- Helper Functions for LIBD Deconvolution☆11Sep 25, 2026Updated last month
- Methods for decontamination of single cell data☆70Oct 9, 2026Updated 2 weeks ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆27Oct 18, 2026Updated last week
- Code referenced in the manuscript 'The 16S rRNA gene for species and strain-level microbiome analysis'☆12Sep 26, 2019Updated 7 years ago
- Spatial neighbour-aware transcript cleanup for imaging-based spatial transcriptomics data (Xenium, MERSCOPE, CosMx). XeniumClean removes…☆21Jul 19, 2026Updated 3 months ago
- Code and example of the D-SPIN framework☆45Updated this week
- Collection of useful methods for single cell analysis☆16Oct 9, 2026Updated 2 weeks ago
- Local Spatial Gradient Inference☆12Jul 28, 2025Updated last year
- A python package for chromVAR☆36May 1, 2023Updated 3 years ago
- Repository containing the code to reproduce the analyses contained in the MEFISTO manuscript☆13Jul 27, 2021Updated 5 years ago
- scTriangulate is a Python package to mix-and-match conflicting clustering results in single cell analysis and generate reconciled cluster…☆41Mar 30, 2026Updated 6 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆12Jul 15, 2026Updated 3 months ago
- Molecular atlas of the human brain vasculature accross development, adulthood and disease at the single-cell level☆15Jul 10, 2024Updated 2 years ago
- Simple template for running snakemake with R☆13Jan 31, 2023Updated 3 years ago
- Characterize A-to-I RNA editing in bulk and single-cell RNA sequencing experiments☆11Sep 27, 2026Updated last month
- ARCADE: Agent-based model of heterogeneous cell populations in dynamic microenvironments☆12Oct 21, 2026Updated last week
- A repository for benchmarking spatial deconvolution and mapping tools☆39May 13, 2025Updated last year
- Single cell Nanopore sequencing data for Genotype and Phenotype☆60May 15, 2025Updated last year