yezhengSTAT / ADTnormLinks
ADTnorm normalizes the cell surface protein measurement of CITE-seq data, facilitating across batches and across studies data integration.
☆22Updated 2 months ago
Alternatives and similar repositories for ADTnorm
Users that are interested in ADTnorm are comparing it to the libraries listed below
Sorting:
- R package for analysing single cell data☆55Updated 2 years ago
- Single-cell analysis with non-negative matrix factorization☆44Updated 7 months ago
- Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles☆32Updated 2 months ago
- Normalize CITEseq Data☆65Updated 2 months ago
- ☆41Updated 3 weeks ago
- R package for decontaminating the spot swapping effect and recovering true expression in spatial transcriptomics data☆33Updated 11 months ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆79Updated last week
- Detection of allele-specific subclonal copy number alterations from single-cell transcriptomic data.☆36Updated 2 weeks ago
- Mosaic single cell data integration using non-overlapping features☆37Updated 2 years ago
- Coarse-graining of large single-cell RNA-seq data into metacells☆81Updated 9 months ago
- Pan-Cancer Single Cell Classifier☆71Updated last year
- Cell type pipes for R☆51Updated last year
- An R package performing object conversion from ArchRProject (ArchR) to Signac SeuratObject (Signac)☆36Updated 9 months ago
- ☆29Updated 2 years ago
- A unified interface to spatial transcriptomics deconvolution tools☆41Updated last month
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆51Updated this week
- A repository for benchmarking spatial deconvolution and mapping tools☆33Updated 3 weeks ago
- Tidy R query API for the harmonised and curated CELLxGENE single-cell atlas.☆90Updated 5 months ago
- Analysis methods for analysing single cell RNA-seq data; particularly with the goal of checking if tentative clusters of cells are signif…☆37Updated last year
- ☆41Updated 4 years ago
- ☆38Updated 8 months ago
- R package for pathway analysis in scRNA-seq data☆73Updated 9 months ago
- identifying disease critical cell types and programs from single cell RNAseq☆56Updated 3 years ago
- Repository for "Effective methods for bulk RNA-seq deconvolution using scRNA-seq and snRNA-seq derived transcriptomes"☆15Updated last year
- scWGCNA☆60Updated 2 years ago
- R package to detect breakpoints and assign somies to scATAC-seq data☆39Updated this week
- R package for specialised analysis of single cell data☆38Updated 2 years ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆43Updated last week
- .h5mu files interface for Seurat☆30Updated last year
- R package developed for single-cell RNA-seq analysis. It was designed using the Seurat framework, and offers existing and novel single-ce…☆29Updated 2 years ago