yezhengSTAT / ADTnormLinks
ADTnorm normalizes the cell surface protein measurement of CITE-seq data, facilitating across batches and across studies data integration.
☆23Updated 2 months ago
Alternatives and similar repositories for ADTnorm
Users that are interested in ADTnorm are comparing it to the libraries listed below
Sorting:
- ☆43Updated 4 years ago
- Analysis methods for analysing single cell RNA-seq data; particularly with the goal of checking if tentative clusters of cells are signif…☆38Updated 2 years ago
- Mosaic single cell data integration using non-overlapping features☆37Updated 3 years ago
- ☆29Updated 2 years ago
- R package for Flexible dot plots☆29Updated 3 years ago
- Single-cell Case Control Analysis☆52Updated this week
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated 10 months ago
- Normalize CITEseq Data☆66Updated 5 months ago
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆39Updated 3 years ago
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆55Updated 3 months ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆87Updated 3 months ago
- R package for robust clustering of single cell RNA sequencing data☆35Updated last year
- Cluster Identity Predictor (R package implementation)☆20Updated 3 years ago
- ☆32Updated 7 months ago
- scWGCNA☆61Updated 2 years ago
- Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles☆33Updated 5 months ago
- InstaPrism is an R package for fast implementation of BayesPrism☆40Updated last year
- Population-scale single-cell RNA-seq profiling across dopaminergic neuron differentiation☆21Updated last year
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆45Updated 2 years ago
- ☆42Updated 3 months ago
- Finding surprising needles (=genes) in haystacks (=single cell transcriptome data).☆85Updated last year
- ☆39Updated 4 years ago
- Single-cell Mutual Information-based Network Engineering Ranger☆20Updated 3 weeks ago
- ☆56Updated 3 weeks ago
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆31Updated last year
- SIB/Scilifelab autumn school in single cell omics 2019.☆22Updated 5 years ago
- Genotype-free demultiplexing of pooled single-cell RNA-Seq, using a hidden state model for identifying genetically distinct samples withi…☆41Updated 2 years ago
- Network construction Algorithm☆22Updated last year
- Multi-omics profiling of peripheral immune system response to SARS-CoV-2 infection☆41Updated 3 years ago
- Coarse-graining of large single-cell RNA-seq data into metacells☆88Updated 2 months ago