blab / evofrLinks
Tools for evolutionary forecasting
☆14Updated 2 months ago
Alternatives and similar repositories for evofr
Users that are interested in evofr are comparing it to the libraries listed below
Sorting:
- Disease outbreak reconstruction from epidemiological and genetic data☆34Updated last year
- Tool for visualising viral lineages in space and time. As seen on covid19.sanger.ac.uk and covglobe.org.☆10Updated 3 years ago
- Estimate growth rate advantage of SARS-CoV2 variants of concern based on international genomic surveillance data and multinomial spline f…☆25Updated 2 years ago
- R package to generate the same BEAST2 XML parameter files as generated by BEAUti 2☆13Updated 3 weeks ago
- Basic Tools for the Analysis of Disease Outbreaks☆12Updated 6 years ago
- Coalescent simulation and likelihood for phylodynamic inference☆14Updated 6 months ago
- Estimating time trees from very large phylogenies☆28Updated last year
- Metagenomics calibration R package☆20Updated 3 years ago
- ☆19Updated 4 years ago
- Conditional Auto-Regressive LASSO in R☆20Updated 3 years ago
- ☆19Updated 3 weeks ago
- Racmacs R package for performing antigenic cartography☆24Updated last year
- Calculate distances between phylogenetic trees in R☆34Updated this week
- Pathogen evolution, selection and immunity☆45Updated last year
- babette is an R package to work with BEAST2☆46Updated 3 weeks ago
- Utilities and distributions for (birth-death) skyline models.☆10Updated 6 years ago
- Phylogenetic inference using Stan