A pipeline to simulate sequencing reads, such as Amplicon, Target Capture, Metagenome, and Whole genome data.
☆35Jul 28, 2026Updated last month
Alternatives and similar repositories for readsimulator
Users that are interested in readsimulator are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Converts bam or cram files to fastq format and does quality control.☆32Updated this week
- A pipeline to identify (and remove) certain sequences from raw genomic data. Default taxon to identify (and remove) is Homo sapiens. Remo…☆24Sep 11, 2026Updated last week
- Pipeline to generate variant catalogues, a list of variants and their frequencies in a population, from whole genome sequences.☆13Jul 28, 2026Updated last month
- Nextflow pipeline to convert VCF files into MAF files.☆10Dec 12, 2025Updated 9 months ago
- Parallelised and automated construction of metagenomic classifier databases of different tools☆22Updated this week
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Pipeline for identifying, annotation, and quantifying phage sequences in (meta)-genomic sequences.☆19Jul 28, 2026Updated last month
- nf-core/phyloplace is a bioinformatics best-practice analysis pipeline that performs phylogenetic placement with EPA-NG.☆12Updated this week
- Opinionated viral metagenomics workflow☆17Updated this week
- Pipeline to fetch metadata and raw FastQ files from public databases☆201Updated this week
- nf-test utility functions☆13Updated this week
- A VSCode extension pack for nf-core developers.☆15Mar 7, 2025Updated last year
- A nf-core pipeline for untargeted whole genome reconstruction with iSNV detection from metagenomic samples.☆40Updated this week
- Assembly and annotation of metatranscriptomic or metagenomic data for prokaryotic, eukaryotic and viruses.☆36Updated this week
- Generation and updating of protein families☆23Updated this week
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Assembly and binning of metagenomes☆320Updated this week
- Taxonomy classification of viral sequences / contigs☆13Jul 15, 2025Updated last year
- A snakemake workflow for benchmarking variant calling approaches with Genome in a Bottle (GIAB), CHM (syndip) or other custom datasets☆13Sep 11, 2026Updated last week
- ☆18Jul 27, 2023Updated 3 years ago
- Pipeline to produce consensus reads using unique molecular indexes/barcodes (UMIs)☆29Updated this week
- ☆13Aug 10, 2026Updated last month
- Assembly and intrahost / low-frequency variant calling for viral samples☆15Feb 12, 2020Updated 6 years ago
- Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data☆194Updated this week
- Simple test framework for Nextflow pipelines☆191Apr 27, 2026Updated 4 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Experimental plugin to integrate GPT like prompt into Nextflow☆17Apr 15, 2024Updated 2 years ago
- Params validation plugin for Nextflow pipelines☆48Aug 7, 2024Updated 2 years ago
- Simulating paired-end short sequencing reads from circular and linear genomes☆17May 14, 2021Updated 5 years ago
- List of IARC bioinformatics pipelines and resources☆58Apr 23, 2026Updated 4 months ago
- The Nextflow language server☆31Updated this week
- A probabilistic framework in PyTorch for phylogenetic models☆20Apr 24, 2026Updated 4 months ago
- ☆11Jul 3, 2022Updated 4 years ago
- Functionality for working with pipeline and sample sheet schema files in Nextflow pipelines☆57Aug 24, 2026Updated 3 weeks ago
- ☆11May 12, 2026Updated 4 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Nextflow language support for Visual Studio Editor☆38Updated this week
- Automatically source dotenv files into your Nextflow scope☆10Mar 27, 2026Updated 5 months ago
- Simple bacterial assembly and annotation pipeline☆93Sep 11, 2026Updated last week
- Metro-map-style SVG diagrams from Mermaid graph definitions, designed for visualizing bioinformatics pipeline workflows☆53Updated this week
- Bioinformatics analysis pipeline for the functional annotation and translation of somatic SNVs/InDels and copy number abberations for pre…☆16Sep 1, 2026Updated 2 weeks ago
- Plasmid and antimicrobial resistance pipeline☆16Sep 11, 2026Updated last week
- TaxTriage is a Nextflow workflow designed to agnostically identify and give confidences of microbial organisms within short- or long-read…☆81Updated this week