nf-core / readsimulatorLinks
A pipeline to simulate sequencing reads, such as Amplicon, Target Capture, Metagenome, and Whole genome data.
☆31Updated this week
Alternatives and similar repositories for readsimulator
Users that are interested in readsimulator are comparing it to the libraries listed below
Sorting:
- Multi-platform genome assembly pipeline for Illumina, Nanopore and PacBio reads☆59Updated 8 months ago
- Assembly and scaffolding of haploid / unphased genomes from long ONT or PacBio HiFi reads☆25Updated this week
- CRyPTIC data processing pipelines☆34Updated 10 months ago
- NGSNGS: Next generation simulator for next generation sequencing data☆50Updated 6 months ago
- A pipeline to identify (and remove) certain sequences from raw genomic data. Default taxon to identify (and remove) is Homo sapiens. Remo…☆20Updated this week
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆53Updated 2 years ago
- Bifrost graph gene caller.☆95Updated 8 months ago
- ☆82Updated last year
- A set of workflows written in Nextflow for Genome Annotation.☆45Updated 11 months ago
- Adapter trimmer for Oxford Nanopore reads using ab initio method☆40Updated 6 months ago
- This repository hosts a large collection of Nextflow snippets☆57Updated 4 months ago
- Simple bacterial assembly and annotation pipeline☆74Updated 2 weeks ago
- TAXnomic Profile Aggregation and STAndardisation☆40Updated 7 months ago
- Split k-mer analysis – version 2☆86Updated 3 months ago
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆70Updated 3 years ago
- whole genome MLST analysis☆43Updated 2 months ago
- Fast k-mer based tool for multi locus sequence typing (MLST)☆44Updated 4 years ago
- ✏️ Genome assembly polishing & SNV detection☆68Updated 3 months ago
- Identify short variants and structural variants from raw sequencing data or genomic sequences☆26Updated last year
- StaG Metagenomic Workflow Collaboration☆29Updated 9 months ago
- Ancient microbiome snakemake workflow☆24Updated last month
- OPAL: Open-community Profiling Assessment tooL☆28Updated 4 months ago
- Circular bacterial genome plots based on BLAST or NUCMER/PROMER alignments☆105Updated last year
- Taxonomic classifier for sequencing reads (bulk and single-cell data, short and long read) using FM-index with run-block compressed BWT.☆58Updated last week
- BEAV: Bacterial Element Annotation reVamped☆66Updated 7 months ago
- reference-based long read assemblies of bacterial genomes☆49Updated 3 years ago
- k-mer learning materials☆70Updated 3 months ago
- A nextflow pipeline for decontamination of short reads, long reads and contigs☆46Updated 5 months ago
- Precise host read removal☆99Updated last month
- Visualize whole genome alignments as linear maps☆72Updated 8 months ago