nf-core / readsimulatorLinks
A pipeline to simulate sequencing reads, such as Amplicon, Target Capture, Metagenome, and Whole genome data.
☆33Updated 8 months ago
Alternatives and similar repositories for readsimulator
Users that are interested in readsimulator are comparing it to the libraries listed below
Sorting:
- ☆84Updated 2 years ago
- Simple bacterial assembly and annotation pipeline☆81Updated last week
- A pipeline to identify (and remove) certain sequences from raw genomic data. Default taxon to identify (and remove) is Homo sapiens. Remo…☆23Updated 2 months ago
- A post sequencing QC tool for Oxford Nanopore sequencers☆106Updated last week
- Circular bacterial genome plots based on BLAST or NUCMER/PROMER alignments☆108Updated 2 years ago
- IS mapping software☆57Updated 4 years ago
- ☆48Updated last month
- FlexTaxD (Flexible Taxonomy Databases) - Create, add, merge different taxonomy sources (QIIME, GTDB, NCBI and more) and create metagenomi…☆67Updated 10 months ago
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆54Updated 2 years ago
- (Meta-)genome screening for functional and natural product gene sequences☆101Updated this week
- Precise host read removal☆115Updated 5 months ago
- MTBseq is an automated pipeline for mapping, variant calling and detection of resistance mediating and phylogenetic variants from illumin…☆47Updated 5 months ago
- Generic but comprehensive pipeline for prokaryotic genome annotation and interrogation with interactive reports and shiny app.☆105Updated 2 weeks ago
- Interactive quality assessment of genome assemblies☆118Updated this week
- Bifrost graph gene caller.☆98Updated 2 weeks ago
- Create BIOM-format tables (http://biom-format.org) from Kraken output (http://ccb.jhu.edu/software/kraken/, https://github.com/DerrickWoo…☆57Updated 3 years ago
- Split k-mer analysis – version 2☆104Updated last week
- Fast k-mer based tool for multi locus sequence typing (MLST)☆45Updated 5 years ago
- seqfu - Sequece Fastx Utilities☆126Updated last week
- Adapter trimmer for Oxford Nanopore reads using ab initio method☆55Updated last year
- A tool for removing redundant genomes from a set of assemblies☆78Updated 4 months ago
- post processing of bacterial pangenome gene presence/absence matrices☆63Updated 2 weeks ago
- Snakemake workflow for metagenomic classification with Kraken2☆67Updated 2 years ago
- Webin command line submission program.☆38Updated 4 months ago
- This repository hosts a large collection of Nextflow snippets☆56Updated last year
- a collection of scripts for organising bacterial genomes by species☆81Updated 3 years ago
- Recentrifuge: robust comparative analysis and contamination removal for metagenomics☆99Updated last month
- ☆81Updated 5 years ago
- Synteny Imager☆65Updated last month
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆68Updated 4 years ago