nf-core / readsimulator
A pipeline to simulate sequencing reads, such as Amplicon, Target Capture, Metagenome, and Whole genome data.
☆28Updated last month
Alternatives and similar repositories for readsimulator:
Users that are interested in readsimulator are comparing it to the libraries listed below
- Multi-platform genome assembly pipeline for Illumina, Nanopore and PacBio reads☆58Updated 6 months ago
- CRyPTIC data processing pipelines☆32Updated 8 months ago
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆53Updated last year
- TAXnomic Profile Aggregation and STAndardisation☆38Updated 4 months ago
- This repository hosts a large collection of Nextflow snippets☆57Updated last month
- Split Kmer Analysis☆62Updated 2 years ago
- Identify short variants and structural variants from raw sequencing data or genomic sequences☆25Updated 11 months ago
- Adapter trimmer for Oxford Nanopore reads using ab initio method☆40Updated 4 months ago
- Simple bacterial assembly and annotation pipeline☆69Updated last week
- A nextflow pipeline for decontamination of short reads, long reads and contigs☆44Updated 3 months ago
- Params validation plugin for Nextflow pipelines☆49Updated 7 months ago
- Fast k-mer based tool for multi locus sequence typing (MLST)☆43Updated 4 years ago
- reference-based long read assemblies of bacterial genomes☆47Updated 3 years ago
- transXpress: a Snakemake pipeline for streamlined de novo transcriptome assembly and annotation☆27Updated last year
- NGSNGS: Next generation simulator for next generation sequencing data☆50Updated 3 months ago
- hecatomb is a virome analysis pipeline for analysis of Illumina sequence data☆57Updated 2 months ago
- whole genome MLST analysis☆41Updated last week
- Split k-mer analysis – version 2☆75Updated last month
- create a interactive coverage plot dashboard from bam files and add gb, vcf and bed tracks☆43Updated 7 months ago
- Recombination-free trees☆57Updated last year
- ☆29Updated 3 months ago
- Precise host read removal☆90Updated 3 months ago
- ☆80Updated last year
- Rapid determination of appropriate reference genomes.☆93Updated 2 months ago
- Bifrost graph gene caller.☆93Updated 6 months ago
- StaG Metagenomic Workflow Collaboration☆29Updated 7 months ago
- A scalable bacterial genome assembly, annotation and analysis pipeline☆73Updated last year
- A pipeline to identify (and remove) certain sequences from raw genomic data. Default taxon to identify (and remove) is Homo sapiens. Remo…☆14Updated last month
- ✏️ Genome assembly polishing & SNV detection☆66Updated last month
- Generic but comprehensive pipeline for prokaryotic genome annotation and interrogation with interactive reports and shiny app.☆100Updated last week